Variant report

Variant	rs10892720
Chromosome Location	chr11:121169193-121169194
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121168682..121170319-chr11:121173753..121175738,2	MCF-7	breast:
2	chr11:121128907..121131227-chr11:121168561..121171348,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109929	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10892717	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12226297	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12363999	0.85[CHB][hapmap]
rs12786590	0.89[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2060008	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35288685	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4423192	0.80[CHB][hapmap]
rs6589872	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7102059	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7104501	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs7106203	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7106859	0.81[CHB][hapmap]
rs7119890	0.80[CHB][hapmap]
rs7930204	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs891441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042295	chr11:121072853-121177079	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv898424	chr11:121108865-121206354	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv898425	chr11:121115206-121215237	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv898426	chr11:121136604-121206354	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121164000-121181400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:121164200-121171000	Weak transcription	Pancreas	Pancrea
3	chr11:121164200-121171400	Weak transcription	Small Intestine	intestine
4	chr11:121164200-121177200	Weak transcription	Placenta	Placenta
5	chr11:121164200-121179600	Weak transcription	Spleen	Spleen
6	chr11:121164200-121183000	Weak transcription	Esophagus	oesophagus
7	chr11:121164400-121171000	Weak transcription	Ovary	ovary
8	chr11:121164400-121171000	Weak transcription	Psoas Muscle	Psoas
9	chr11:121164400-121171200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:121164400-121174600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr11:121164400-121174600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:121164400-121175000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr11:121164400-121177000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:121164400-121177400	Weak transcription	Lung	lung
15	chr11:121164400-121177600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:121164400-121179400	Weak transcription	Colonic Mucosa	Colon
17	chr11:121164400-121183000	Weak transcription	Fetal Stomach	stomach
18	chr11:121164600-121171000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr11:121164600-121171000	Weak transcription	Right Ventricle	heart
20	chr11:121164600-121175000	Weak transcription	Fetal Muscle Leg	muscle
21	chr11:121164600-121175000	Weak transcription	Fetal Thymus	thymus
22	chr11:121164600-121175400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:121164600-121177400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:121164600-121177600	Weak transcription	Aorta	Aorta
25	chr11:121164600-121180200	Weak transcription	K562	blood
26	chr11:121164800-121169800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:121164800-121170800	Weak transcription	Stomach Mucosa	stomach
28	chr11:121164800-121171000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr11:121164800-121171000	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr11:121164800-121175000	Weak transcription	Primary B cells from cord blood	blood
31	chr11:121164800-121175000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr11:121164800-121175000	Weak transcription	Brain Anterior Caudate	brain
33	chr11:121164800-121175000	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr11:121164800-121177000	Weak transcription	Brain Germinal Matrix	brain
35	chr11:121164800-121177200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:121164800-121177200	Weak transcription	Fetal Kidney	kidney
37	chr11:121164800-121177200	Weak transcription	Osteobl	bone
38	chr11:121164800-121177400	Weak transcription	Thymus	Thymus
39	chr11:121164800-121182000	Weak transcription	A549	lung
40	chr11:121165000-121170800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr11:121165000-121171000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr11:121165000-121174400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:121165000-121175000	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr11:121165000-121175400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr11:121165000-121176000	Weak transcription	Fetal Intestine Large	intestine
46	chr11:121165000-121177200	Weak transcription	Brain Hippocampus Middle	brain
47	chr11:121165000-121177200	Weak transcription	Brain Substantia Nigra	brain
48	chr11:121165000-121189400	Weak transcription	Fetal Intestine Small	intestine
49	chr11:121165200-121174000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr11:121165200-121174200	Weak transcription	Primary B cells from peripheral blood	blood

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