Variant report

Variant	rs891441
Chromosome Location	chr11:121165092-121165093
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121120979..121124837-chr11:121162716..121167264,4	MCF-7	breast:
2	chr11:121135011..121137028-chr11:121164041..121166376,2	K562	blood:

Variant related genes	Relation type
ENSG00000244400	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10892717	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10892720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12226297	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12363999	0.85[CHB][hapmap]
rs12786590	0.89[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2060008	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35288685	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4423192	0.80[CHB][hapmap]
rs6589872	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7102059	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7104501	0.85[CHB][hapmap]
rs7106203	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7106859	0.81[CHB][hapmap]
rs7119890	0.80[CHB][hapmap]
rs7930204	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042295	chr11:121072853-121177079	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv898424	chr11:121108865-121206354	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv898425	chr11:121115206-121215237	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv898426	chr11:121136604-121206354	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121162600-121165400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr11:121162600-121165400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:121162600-121165400	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr11:121162600-121165400	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr11:121162600-121165400	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr11:121162600-121165600	Active TSS	Muscle Satellite Cultured Cells	--
7	chr11:121162600-121166400	Active TSS	H9 Cell Line	embryonic stem cell
8	chr11:121162800-121165200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:121162800-121165400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:121162800-121166800	Active TSS	GM12878-XiMat	blood
11	chr11:121163000-121165400	Active TSS	H1 Cell Line	embryonic stem cell
12	chr11:121163000-121165400	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr11:121163000-121165400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:121163000-121166600	Active TSS	HSMMtube	muscle
15	chr11:121163200-121165200	Active TSS	NHLF	lung
16	chr11:121163200-121165400	Active TSS	HMEC	breast
17	chr11:121164000-121165600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:121164000-121181400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:121164200-121165200	Flanking Active TSS	HUVEC	blood vessel
20	chr11:121164200-121165800	Weak transcription	Gastric	stomach
21	chr11:121164200-121167000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:121164200-121171000	Weak transcription	Pancreas	Pancrea
23	chr11:121164200-121171400	Weak transcription	Small Intestine	intestine
24	chr11:121164200-121177200	Weak transcription	Placenta	Placenta
25	chr11:121164200-121179600	Weak transcription	Spleen	Spleen
26	chr11:121164200-121183000	Weak transcription	Esophagus	oesophagus
27	chr11:121164400-121165200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:121164400-121165200	Enhancers	Primary B cells from peripheral blood	blood
29	chr11:121164400-121165200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
30	chr11:121164400-121165400	Enhancers	Primary T cells from cord blood	blood
31	chr11:121164400-121166400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
32	chr11:121164400-121167000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:121164400-121167200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr11:121164400-121168800	Weak transcription	Left Ventricle	heart
35	chr11:121164400-121171000	Weak transcription	Ovary	ovary
36	chr11:121164400-121171000	Weak transcription	Psoas Muscle	Psoas
37	chr11:121164400-121171200	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr11:121164400-121174600	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr11:121164400-121174600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr11:121164400-121175000	Weak transcription	Fetal Muscle Trunk	muscle
41	chr11:121164400-121177000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:121164400-121177400	Weak transcription	Lung	lung
43	chr11:121164400-121177600	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr11:121164400-121179400	Weak transcription	Colonic Mucosa	Colon
45	chr11:121164400-121183000	Weak transcription	Fetal Stomach	stomach
46	chr11:121164600-121165200	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr11:121164600-121165200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:121164600-121165200	Flanking Active TSS	Liver	Liver
49	chr11:121164600-121165200	Enhancers	NH-A	brain
50	chr11:121164600-121165400	Active TSS	HepG2	liver

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