Variant report

Variant	rs10895010
Chromosome Location	chr11:100597768-100597769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11224409	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11224453	1.00[JPT][hapmap]
rs1827433	1.00[ASN][1000 genomes]
rs545547	1.00[JPT][hapmap]
rs639926	1.00[JPT][hapmap]
rs658899	1.00[JPT][hapmap]
rs6590809	0.85[CHD][hapmap]
rs7943581	0.92[ASN][1000 genomes]
rs7951366	0.85[ASN][1000 genomes]
rs7951626	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053430	chr11:99888390-100629136	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1042067	chr11:99889697-100629136	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1037689	chr11:99895378-100624599	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1040942	chr11:99895378-100629136	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1039852	chr11:99901695-100610533	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv541152	chr11:99901695-100610533	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1045190	chr11:99913193-100627395	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv541153	chr11:99913193-100627395	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv529454	chr11:99913394-100627255	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv520995	chr11:100163957-100681211	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv1043022	chr11:100387466-100610533	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv832246	chr11:100426725-100606957	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv898327	chr11:100569021-100631075	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10895010	ARHGAP42	cis	parietal	SCAN

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100590800-100609600	Weak transcription	Fetal Intestine Small	intestine
2	chr11:100590800-100611000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr11:100591000-100598000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:100591000-100611000	Weak transcription	NHLF	lung
5	chr11:100591000-100611200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:100596200-100598200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:100596600-100599200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr11:100596600-100601400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:100596800-100598400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr11:100596800-100599400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr11:100596800-100599800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr11:100596800-100599800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr11:100596800-100599800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr11:100596800-100599800	Enhancers	Fetal Heart	heart
15	chr11:100596800-100602600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr11:100597000-100598200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:100597000-100599200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:100597000-100599800	Enhancers	H1 Cell Line	embryonic stem cell
19	chr11:100597000-100599800	Enhancers	H9 Cell Line	embryonic stem cell
20	chr11:100597000-100599800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr11:100597200-100597800	Enhancers	A549	lung
22	chr11:100597400-100598600	Enhancers	Adipose Nuclei	Adipose
23	chr11:100597400-100599200	Enhancers	Psoas Muscle	Psoas
24	chr11:100597400-100599800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr11:100597400-100599800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:100597400-100599800	Enhancers	Fetal Muscle Leg	muscle
27	chr11:100597600-100597800	Enhancers	Right Ventricle	heart
28	chr11:100597600-100598400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:100597600-100598400	Enhancers	Ovary	ovary
30	chr11:100597600-100598600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr11:100597600-100598800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:100597600-100598800	Enhancers	HSMM	muscle
33	chr11:100597600-100599200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr11:100597600-100599800	Enhancers	Left Ventricle	heart
35	chr11:100597600-100599800	Enhancers	Skeletal Muscle Female	skeletal muscle

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