Variant report

Variant	rs639926
Chromosome Location	chr11:100709111-100709112
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10750596	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11224453	0.86[JPT][hapmap]
rs1145429	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1943501	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs513429	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs529751	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs545547	1.00[JPT][hapmap]
rs550024	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs556823	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs590834	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs614686	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs623540	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs629425	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs629864	1.00[ASN][1000 genomes]
rs637127	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs658899	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs661758	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs667504	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs682031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100698800-100712400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:100699600-100722400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:100701600-100717000	Weak transcription	Fetal Kidney	kidney
4	chr11:100703000-100710800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:100703000-100731800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:100703800-100712400	Weak transcription	Left Ventricle	heart
7	chr11:100704400-100710200	Weak transcription	Fetal Muscle Leg	muscle
8	chr11:100704600-100719600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:100704800-100710400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:100705200-100711200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:100705200-100711800	Weak transcription	Stomach Mucosa	stomach
12	chr11:100705400-100711800	Weak transcription	A549	lung
13	chr11:100705400-100712000	Weak transcription	Liver	Liver
14	chr11:100705400-100712600	Weak transcription	HSMMtube	muscle
15	chr11:100706600-100709200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr11:100706800-100709200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr11:100707600-100709200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr11:100708800-100710200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:100709000-100715000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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