Variant report

Variant	rs1145429
Chromosome Location	chr11:100721689-100721690
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10750596	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1943501	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs513429	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs529751	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs550024	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs556823	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs590834	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs614686	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs623540	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs629425	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs629864	0.93[ASN][1000 genomes]
rs637127	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs639926	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs658899	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs661758	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs667504	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs682031	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs683072	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv468849	chr11:100713227-100733120	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv556129	chr11:100713227-100733120	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100699600-100722400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:100703000-100731800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:100713400-100722000	Weak transcription	Hela-S3	cervix
4	chr11:100716800-100727000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:100717600-100722800	Enhancers	Fetal Heart	heart
6	chr11:100719000-100722600	Enhancers	NHDF-Ad	bronchial
7	chr11:100719400-100722200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:100719400-100722800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:100719600-100722000	Enhancers	NHLF	lung
10	chr11:100720000-100721800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:100720200-100721800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:100720200-100722400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:100720200-100745000	Weak transcription	Fetal Muscle Leg	muscle
14	chr11:100720600-100722000	Enhancers	Liver	Liver
15	chr11:100720600-100722600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr11:100720600-100726400	Weak transcription	Adipose Nuclei	Adipose
17	chr11:100720600-100728000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:100720600-100733400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr11:100720800-100721800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:100720800-100721800	Weak transcription	A549	lung
21	chr11:100720800-100721800	Weak transcription	NHEK	skin
22	chr11:100720800-100726000	Weak transcription	Fetal Kidney	kidney
23	chr11:100721000-100722800	Bivalent Enhancer	Fetal Lung	lung
24	chr11:100721000-100723400	Weak transcription	Stomach Mucosa	stomach
25	chr11:100721000-100725800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:100721000-100726000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:100721000-100726000	Weak transcription	Osteobl	bone
28	chr11:100721000-100730800	Weak transcription	Fetal Intestine Small	intestine
29	chr11:100721200-100722400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:100721200-100726000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:100721600-100722000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:100721600-100722000	Weak transcription	Fetal Stomach	stomach
33	chr11:100721600-100722600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:100721600-100723400	Enhancers	Placenta	Placenta
35	chr11:100721600-100733400	Weak transcription	Fetal Muscle Trunk	muscle

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