Variant report

Variant	rs629864
Chromosome Location	chr11:100699139-100699140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100553219..100554082-chr11:100698972..100699516,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10750596	0.90[ASN][1000 genomes]
rs11224453	1.00[JPT][hapmap]
rs1145429	0.93[ASN][1000 genomes]
rs1943501	0.93[ASN][1000 genomes]
rs3858413	0.81[AFR][1000 genomes]
rs513429	0.93[ASN][1000 genomes]
rs529751	1.00[ASN][1000 genomes]
rs545547	1.00[JPT][hapmap]
rs550024	0.93[ASN][1000 genomes]
rs556823	0.93[ASN][1000 genomes]
rs590834	0.93[ASN][1000 genomes]
rs614686	0.93[ASN][1000 genomes]
rs623540	1.00[ASN][1000 genomes]
rs629425	0.93[ASN][1000 genomes]
rs637127	0.93[ASN][1000 genomes]
rs639926	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs658899	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs661758	0.93[ASN][1000 genomes]
rs667504	0.93[ASN][1000 genomes]
rs682031	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100681400-100701000	Weak transcription	HSMM	muscle
2	chr11:100686200-100702800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:100688000-100704000	Weak transcription	Right Ventricle	heart
4	chr11:100694400-100701000	Weak transcription	HSMMtube	muscle
5	chr11:100695000-100701000	Weak transcription	Psoas Muscle	Psoas
6	chr11:100696200-100703000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:100696800-100701000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:100696800-100701000	Weak transcription	Brain Anterior Caudate	brain
9	chr11:100696800-100701000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr11:100696800-100701200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:100696800-100701200	Weak transcription	NHDF-Ad	bronchial
12	chr11:100696800-100704200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:100697000-100701400	Weak transcription	Colon Smooth Muscle	Colon
14	chr11:100697000-100701400	Weak transcription	Fetal Stomach	stomach
15	chr11:100697200-100701000	Weak transcription	Fetal Kidney	kidney
16	chr11:100697200-100701400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:100697800-100699600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:100697800-100700200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:100698000-100699200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr11:100698000-100699200	Enhancers	H9 Cell Line	embryonic stem cell
21	chr11:100698000-100699200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr11:100698000-100699200	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr11:100698000-100699200	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr11:100698000-100699200	Enhancers	Stomach Mucosa	stomach
25	chr11:100698000-100699400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:100698000-100699400	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr11:100698000-100699400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:100698000-100699400	Enhancers	Fetal Thymus	thymus
29	chr11:100698000-100699600	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr11:100698000-100699600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:100698000-100699600	Enhancers	Fetal Heart	heart
32	chr11:100698000-100699800	Enhancers	H1 Cell Line	embryonic stem cell
33	chr11:100698000-100699800	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr11:100698200-100699200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:100698200-100699200	Enhancers	Adipose Nuclei	Adipose
36	chr11:100698200-100699200	Enhancers	HMEC	breast
37	chr11:100698200-100699400	Enhancers	A549	lung
38	chr11:100698200-100699600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:100698200-100701200	Weak transcription	Right Atrium	heart
40	chr11:100698200-100704600	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr11:100698400-100701000	Weak transcription	Left Ventricle	heart
42	chr11:100698400-100701400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:100698400-100702800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr11:100698600-100699200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:100698600-100699200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:100698600-100699200	Enhancers	NHEK	skin
47	chr11:100698600-100699400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr11:100698600-100699400	Enhancers	NH-A	brain
49	chr11:100698600-100699800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:100698600-100701000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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