Variant report

Variant	rs3858413
Chromosome Location	chr11:100701908-100701909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs629864	0.81[AFR][1000 genomes]
rs639926	1.00[CEU][hapmap]
rs658899	1.00[CEU][hapmap]
rs661237	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs662501	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7129820	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100686200-100702800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:100688000-100704000	Weak transcription	Right Ventricle	heart
3	chr11:100696200-100703000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:100696800-100704200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:100698200-100704600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr11:100698400-100702800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:100698600-100702800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:100698800-100712400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:100699000-100702800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:100699000-100703400	Weak transcription	Fetal Intestine Small	intestine
11	chr11:100699200-100702600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:100699400-100702400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:100699400-100702600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:100699600-100722400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:100700000-100704800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:100700800-100702000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr11:100700800-100703000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr11:100700800-100704200	Enhancers	Fetal Heart	heart
19	chr11:100700800-100704800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:100701000-100702000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr11:100701000-100702000	Enhancers	Esophagus	oesophagus
22	chr11:100701000-100702000	Enhancers	Gastric	stomach
23	chr11:100701000-100703000	Enhancers	NH-A	brain
24	chr11:100701000-100703200	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr11:100701000-100703200	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr11:100701000-100703400	Enhancers	Osteobl	bone
27	chr11:100701000-100703800	Enhancers	Fetal Muscle Leg	muscle
28	chr11:100701000-100703800	Enhancers	Left Ventricle	heart
29	chr11:100701000-100704000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr11:100701000-100704400	Enhancers	Hela-S3	cervix
31	chr11:100701000-100704600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:100701000-100704600	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr11:100701000-100704600	Enhancers	Adipose Nuclei	Adipose
34	chr11:100701000-100705400	Enhancers	HSMM	muscle
35	chr11:100701200-100702000	Enhancers	Brain Cingulate Gyrus	brain
36	chr11:100701200-100702200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:100701200-100702200	Flanking Active TSS	NHEK	skin
38	chr11:100701200-100702600	Enhancers	Stomach Mucosa	stomach
39	chr11:100701200-100702800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:100701200-100702800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:100701200-100703000	Enhancers	H1 Cell Line	embryonic stem cell
42	chr11:100701200-100703400	Enhancers	Liver	Liver
43	chr11:100701200-100703800	Enhancers	NHLF	lung
44	chr11:100701200-100704600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:100701200-100704600	Enhancers	NHDF-Ad	bronchial
46	chr11:100701400-100702600	Enhancers	Colon Smooth Muscle	Colon
47	chr11:100701400-100703000	Enhancers	Fetal Stomach	stomach
48	chr11:100701400-100703200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr11:100701400-100703800	Enhancers	Placenta	Placenta
50	chr11:100701400-100704400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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