Variant report

Variant	rs661758
Chromosome Location	chr11:100731405-100731406
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100731277..100733335-chr11:100735831..100738169,2	K562	blood:
2	chr11:100659587..100661942-chr11:100730369..100732286,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10750596	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1145429	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943501	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs513429	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs529751	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs550024	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs556823	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs590834	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs614686	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs623540	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs629425	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs629864	0.93[ASN][1000 genomes]
rs637127	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs639926	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs658899	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs667504	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs682031	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs683072	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv468849	chr11:100713227-100733120	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv556129	chr11:100713227-100733120	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100703000-100731800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:100720200-100745000	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:100720600-100733400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr11:100721600-100733400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:100722200-100734000	Weak transcription	Fetal Stomach	stomach
6	chr11:100722600-100733800	Weak transcription	NHDF-Ad	bronchial
7	chr11:100722800-100746400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:100722800-100747200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:100725800-100732200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr11:100726400-100732600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr11:100726400-100738400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:100727000-100734000	Weak transcription	HSMM	muscle
13	chr11:100727200-100734000	Weak transcription	Osteobl	bone
14	chr11:100728600-100732000	Weak transcription	Small Intestine	intestine
15	chr11:100728600-100734000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:100728600-100734000	Weak transcription	NH-A	brain
17	chr11:100728800-100734000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:100728800-100740200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr11:100728800-100741000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:100729000-100733400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:100729000-100733400	Weak transcription	HSMMtube	muscle
22	chr11:100729200-100733800	Weak transcription	Fetal Heart	heart
23	chr11:100729600-100731800	Weak transcription	Primary B cells from cord blood	blood
24	chr11:100729800-100732400	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr11:100729800-100734000	Weak transcription	Psoas Muscle	Psoas
26	chr11:100730000-100732200	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr11:100730000-100733600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:100730000-100733800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:100730200-100732000	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr11:100730200-100733800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:100730800-100731600	Enhancers	Liver	Liver
32	chr11:100730800-100732000	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr11:100730800-100732400	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr11:100730800-100732600	Enhancers	Fetal Intestine Small	intestine
35	chr11:100730800-100734800	Enhancers	Hela-S3	cervix
36	chr11:100731000-100732000	Enhancers	H1 Cell Line	embryonic stem cell
37	chr11:100731200-100731600	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr11:100731200-100731800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr11:100731200-100731800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:100731200-100732000	Enhancers	Placenta	Placenta
41	chr11:100731200-100732600	Enhancers	H9 Cell Line	embryonic stem cell
42	chr11:100731200-100732800	Enhancers	Stomach Mucosa	stomach
43	chr11:100731400-100732000	Enhancers	Fetal Intestine Large	intestine
44	chr11:100731400-100732000	Enhancers	Placenta Amnion	Placenta Amnion
45	chr11:100731400-100732000	Enhancers	K562	blood
46	chr11:100731400-100732400	Weak transcription	Rectal Smooth Muscle	rectum
47	chr11:100731400-100732600	Enhancers	A549	lung
48	chr11:100731400-100738600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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