Variant report

Variant	rs10750596
Chromosome Location	chr11:100742862-100742863
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11224453	1.00[JPT][hapmap]
rs1145429	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1943501	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs513429	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs529751	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs545547	1.00[JPT][hapmap]
rs550024	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs556823	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs590834	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs614686	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs623540	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs629425	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs629864	0.90[ASN][1000 genomes]
rs637127	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs639926	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs655175	0.89[ASW][hapmap];0.82[LWK][hapmap]
rs658899	1.00[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs661758	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs667504	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs682031	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs683072	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7129820	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100720200-100745000	Weak transcription	Fetal Muscle Leg	muscle
2	chr11:100722800-100746400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:100722800-100747200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:100733800-100746000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:100734200-100748400	Weak transcription	Left Ventricle	heart
6	chr11:100734400-100747400	Weak transcription	Adipose Nuclei	Adipose
7	chr11:100734400-100747600	Weak transcription	Fetal Stomach	stomach
8	chr11:100734400-100747600	Weak transcription	Right Atrium	heart
9	chr11:100734800-100743200	Weak transcription	HSMM	muscle
10	chr11:100737600-100745400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:100738200-100744200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:100739000-100743400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:100741000-100743200	Weak transcription	Stomach Mucosa	stomach
14	chr11:100741200-100743800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:100741200-100744400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:100741200-100744600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:100741200-100745000	Weak transcription	Fetal Heart	heart
18	chr11:100741200-100747400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr11:100741400-100743000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr11:100741400-100743400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:100741400-100743400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:100741400-100744800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr11:100741400-100750200	Weak transcription	K562	blood
24	chr11:100741600-100743400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr11:100741600-100744400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr11:100741600-100748200	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links