Variant report

Variant	rs10895322
Chromosome Location	chr11:102470256-102470257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102460887..102463879-chr11:102468746..102470729,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10895323	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11225333	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17099008	0.85[GIH][hapmap]
rs3781788	0.84[JPT][hapmap]
rs5024119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102464000-102470800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:102466000-102470600	Weak transcription	Small Intestine	intestine
3	chr11:102466800-102474200	Enhancers	HepG2	liver
4	chr11:102467600-102470800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:102469000-102470600	Enhancers	Hela-S3	cervix
6	chr11:102469000-102470600	Enhancers	HMEC	breast
7	chr11:102469000-102470600	Enhancers	NH-A	brain
8	chr11:102469000-102471600	Enhancers	Fetal Intestine Large	intestine
9	chr11:102469200-102470600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr11:102469200-102470600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:102469200-102470600	Enhancers	NHEK	skin
12	chr11:102469200-102470600	Enhancers	NHLF	lung
13	chr11:102469200-102470600	Enhancers	Osteobl	bone
14	chr11:102469200-102471600	Enhancers	NHDF-Ad	bronchial
15	chr11:102469200-102471800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:102469200-102471800	Enhancers	Stomach Mucosa	stomach
17	chr11:102469200-102475800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:102469200-102476200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:102469400-102470600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:102469400-102470600	Enhancers	HSMM	muscle
21	chr11:102469400-102471400	Enhancers	Fetal Intestine Small	intestine
22	chr11:102469400-102471600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:102469400-102471600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr11:102469400-102471800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:102469400-102473400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:102469600-102470600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr11:102469600-102470600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:102469600-102470600	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr11:102469600-102470600	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr11:102469600-102471000	Enhancers	GM12878-XiMat	blood
31	chr11:102469800-102474400	Weak transcription	Pancreas	Pancrea
32	chr11:102470000-102470600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:102470000-102471000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:102470000-102471200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:102470000-102472400	Enhancers	HSMMtube	muscle
36	chr11:102470000-102476000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:102470200-102470400	Flanking Active TSS	HUVEC	blood vessel
38	chr11:102470200-102470800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:102470200-102471000	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr11:102470200-102471000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:102470200-102471200	Active TSS	A549	lung
42	chr11:102470200-102472400	Enhancers	Cortex derived primary cultured neurospheres	brain

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