Variant report

Variant	rs10895323
Chromosome Location	chr11:102470895-102470896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10895321	0.92[ASN][1000 genomes]
rs10895322	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs1612069	0.89[ASN][1000 genomes]
rs1632456	0.89[ASN][1000 genomes]
rs1711399	0.89[ASN][1000 genomes]
rs1711400	0.88[ASN][1000 genomes]
rs1711401	0.89[ASN][1000 genomes]
rs1711434	0.89[ASN][1000 genomes]
rs1711438	0.89[ASN][1000 genomes]
rs1711441	0.89[ASN][1000 genomes]
rs1711443	0.89[ASN][1000 genomes]
rs1784400	0.89[ASN][1000 genomes]
rs1784405	0.89[ASN][1000 genomes]
rs1784407	0.89[ASN][1000 genomes]
rs1784409	0.87[ASN][1000 genomes]
rs1784439	0.89[ASN][1000 genomes]
rs1784440	0.89[ASN][1000 genomes]
rs1784441	0.89[ASN][1000 genomes]
rs1784444	0.89[ASN][1000 genomes]
rs1784445	0.89[ASN][1000 genomes]
rs1784446	0.89[ASN][1000 genomes]
rs1784447	0.89[ASN][1000 genomes]
rs1784449	0.89[ASN][1000 genomes]
rs2292733	0.93[ASN][1000 genomes]
rs2459479	0.89[ASN][1000 genomes]
rs2459480	0.89[ASN][1000 genomes]
rs2509015	0.89[ASN][1000 genomes]
rs2509016	0.88[ASN][1000 genomes]
rs2509017	0.89[ASN][1000 genomes]
rs5024119	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7950388	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102466800-102474200	Enhancers	HepG2	liver
2	chr11:102469000-102471600	Enhancers	Fetal Intestine Large	intestine
3	chr11:102469200-102471600	Enhancers	NHDF-Ad	bronchial
4	chr11:102469200-102471800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:102469200-102471800	Enhancers	Stomach Mucosa	stomach
6	chr11:102469200-102475800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:102469200-102476200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:102469400-102471400	Enhancers	Fetal Intestine Small	intestine
9	chr11:102469400-102471600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:102469400-102471600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr11:102469400-102471800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:102469400-102473400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:102469600-102471000	Enhancers	GM12878-XiMat	blood
14	chr11:102469800-102474400	Weak transcription	Pancreas	Pancrea
15	chr11:102470000-102471000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:102470000-102471200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:102470000-102472400	Enhancers	HSMMtube	muscle
18	chr11:102470000-102476000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:102470200-102471000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr11:102470200-102471000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:102470200-102471200	Active TSS	A549	lung
22	chr11:102470200-102472400	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr11:102470400-102471000	Enhancers	K562	blood
24	chr11:102470600-102471000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr11:102470600-102471000	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr11:102470600-102471000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:102470600-102471000	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr11:102470600-102471000	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr11:102470600-102471000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr11:102470600-102471000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:102470600-102471000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:102470600-102471000	Enhancers	Duodenum Mucosa	Duodenum
33	chr11:102470600-102471000	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr11:102470600-102471000	Flanking Active TSS	Hela-S3	cervix
35	chr11:102470600-102471000	Flanking Active TSS	HMEC	breast
36	chr11:102470600-102471000	Flanking Active TSS	HSMM	muscle
37	chr11:102470600-102471000	Flanking Active TSS	HUVEC	blood vessel
38	chr11:102470600-102471000	Flanking Active TSS	NHEK	skin
39	chr11:102470600-102471000	Flanking Active TSS	NHLF	lung
40	chr11:102470600-102471000	Flanking Active TSS	Osteobl	bone
41	chr11:102470600-102471200	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr11:102470600-102471200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:102470600-102471200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
44	chr11:102470600-102471200	Enhancers	Small Intestine	intestine
45	chr11:102470600-102471200	Flanking Active TSS	NH-A	brain
46	chr11:102470800-102471000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr11:102470800-102471000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr11:102470800-102471000	Enhancers	Brain Anterior Caudate	brain
49	chr11:102470800-102471000	Enhancers	Brain Hippocampus Middle	brain
50	chr11:102470800-102472400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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