Variant report

Variant	rs2509016
Chromosome Location	chr11:102471431-102471432
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10895321	0.95[ASN][1000 genomes]
rs10895323	0.88[ASN][1000 genomes]
rs1612069	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1615443	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1632456	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1711399	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1711400	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1711401	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1711430	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1711432	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1711434	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1711438	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1711441	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1711442	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1711443	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784400	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1784405	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784407	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784409	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1784410	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1784428	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1784431	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1784432	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1784433	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1784434	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1784435	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1784436	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1784437	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1784438	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1784439	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784440	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784441	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784444	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784445	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784446	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784447	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784449	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2292733	0.95[ASN][1000 genomes]
rs2459479	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2459480	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2509015	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2509017	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2509018	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2701961	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7950388	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102466800-102474200	Enhancers	HepG2	liver
2	chr11:102469000-102471600	Enhancers	Fetal Intestine Large	intestine
3	chr11:102469200-102471600	Enhancers	NHDF-Ad	bronchial
4	chr11:102469200-102471800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:102469200-102471800	Enhancers	Stomach Mucosa	stomach
6	chr11:102469200-102475800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:102469200-102476200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:102469400-102471600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:102469400-102471600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr11:102469400-102471800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:102469400-102473400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:102469800-102474400	Weak transcription	Pancreas	Pancrea
13	chr11:102470000-102472400	Enhancers	HSMMtube	muscle
14	chr11:102470000-102476000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:102470200-102472400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr11:102470800-102472400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:102470800-102475200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:102470800-102476000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr11:102471000-102471600	Enhancers	Hela-S3	cervix
20	chr11:102471000-102471600	Enhancers	HUVEC	blood vessel
21	chr11:102471000-102471600	Enhancers	NHLF	lung
22	chr11:102471000-102471800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:102471000-102471800	Enhancers	NHEK	skin
24	chr11:102471000-102471800	Enhancers	Osteobl	bone
25	chr11:102471000-102472000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:102471000-102472400	Weak transcription	Brain Anterior Caudate	brain
27	chr11:102471000-102472400	Weak transcription	Brain Hippocampus Middle	brain
28	chr11:102471000-102472600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:102471000-102473600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:102471000-102473800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr11:102471000-102473800	Weak transcription	GM12878-XiMat	blood
32	chr11:102471000-102474000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr11:102471000-102474000	Enhancers	HSMM	muscle
34	chr11:102471000-102474200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr11:102471000-102476200	Enhancers	HMEC	breast
36	chr11:102471200-102471600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr11:102471200-102471600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:102471200-102471800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:102471200-102471800	Enhancers	Muscle Satellite Cultured Cells	--
40	chr11:102471200-102471800	Enhancers	Placenta	Placenta
41	chr11:102471200-102472400	Enhancers	A549	lung
42	chr11:102471200-102474000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:102471200-102475000	Enhancers	NH-A	brain
44	chr11:102471400-102471600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr11:102471400-102471600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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