Variant report

Variant	rs1711430
Chromosome Location	chr11:102474322-102474323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr11:102473697-102474355	HepG2	liver:	n/a	n/a
2	CBX3	chr11:102473652-102474760	HCT-116	colon:	n/a	n/a
3	MAX	chr11:102473550-102474468	HCT-116	colon:	n/a	n/a
4	JUND	chr11:102473559-102474689	HCT-116	colon:	n/a	chr11:102474541-102474551
5	SP1	chr11:102473618-102474707	HCT-116	colon:	n/a	n/a
6	POLR2A	chr11:102473739-102474621	PANC-1	pancreas:	n/a	n/a
7	JUND	chr11:102473600-102474327	SK-N-SH	brain:	n/a	n/a
8	CBX3	chr11:102473589-102474799	HCT-116	colon:	n/a	n/a
9	EP300	chr11:102473623-102474466	HepG2	liver:	n/a	n/a
10	TCF7L2	chr11:102473431-102474330	PANC-1	pancreas:	n/a	chr11:102474027-102474041
11	TEAD4	chr11:102473650-102474330	SK-N-SH	brain:	n/a	n/a
12	TCF12	chr11:102473507-102474377	SK-N-SH	brain:	n/a	chr11:102473938-102473946
13	MYBL2	chr11:102473734-102474346	HepG2	liver:	n/a	n/a
14	EP300	chr11:102473580-102474704	SK-N-SH	brain:	n/a	n/a
15	FOSL1	chr11:102473559-102474836	HCT-116	colon:	n/a	chr11:102474541-102474551
16	SIN3AK20	chr11:102473703-102474384	HCT-116	colon:	n/a	n/a
17	TCF12	chr11:102473696-102474352	SK-N-SH	brain:	n/a	chr11:102473938-102473946
18	MAX	chr11:102473625-102474611	HCT-116	colon:	n/a	n/a
19	JUND	chr11:102473552-102474789	HCT-116	colon:	n/a	chr11:102474541-102474551
20	TEAD4	chr11:102473686-102474343	HCT-116	colon:	n/a	n/a
21	MAFK	chr11:102473834-102474640	HepG2	liver:	n/a	n/a
22	CEBPB	chr11:102473631-102474652	HCT-116	colon:	n/a	n/a
23	POLR2A	chr11:102473802-102475033	HepG2	liver:	n/a	n/a
24	RCOR1	chr11:102473909-102474332	HepG2	liver:	n/a	n/a
25	SIN3AK20	chr11:102473566-102474748	HCT-116	colon:	n/a	n/a
26	SP1	chr11:102473496-102474736	HCT-116	colon:	n/a	n/a
27	FOSL1	chr11:102473763-102474671	HCT-116	colon:	n/a	chr11:102474541-102474551
28	TEAD4	chr11:102473560-102474435	HepG2	liver:	n/a	n/a
29	CEBPB	chr11:102473493-102474790	HCT-116	colon:	n/a	n/a

Variant related genes	Relation type
ENSG00000256916	TF binding region

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1612069	0.89[CEU][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1613596	0.87[EUR][1000 genomes]
rs1615443	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1632456	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1711399	0.89[CEU][hapmap];0.81[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1711400	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1711401	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1711403	0.87[ASN][1000 genomes]
rs1711432	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1711434	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1711437	0.82[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs1711438	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1711439	0.82[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs1711441	0.89[CEU][hapmap];0.82[JPT][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1711442	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1711443	0.93[CEU][hapmap];0.83[JPT][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1784400	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1784405	0.89[CEU][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1784407	0.89[CEU][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1784409	0.86[CEU][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1784410	0.85[CEU][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1784428	0.92[CEU][hapmap];0.83[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1784430	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1784431	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1784432	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784434	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784435	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784436	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784437	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784438	0.89[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784439	0.89[CEU][hapmap];0.83[JPT][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1784440	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1784441	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1784442	0.90[CEU][hapmap];0.89[JPT][hapmap]
rs1784444	0.92[CEU][hapmap];0.81[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1784445	0.89[CEU][hapmap];0.82[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1784446	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1784447	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1784449	0.89[CEU][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1784451	0.87[ASN][1000 genomes]
rs2459479	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2459480	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2509015	0.89[CEU][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2509016	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2509017	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2509018	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2701961	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2846369	0.87[ASN][1000 genomes]
rs751547	0.82[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102469200-102475800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:102469200-102476200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:102469800-102474400	Weak transcription	Pancreas	Pancrea
4	chr11:102470000-102476000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:102470800-102475200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:102470800-102476000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:102471000-102476200	Enhancers	HMEC	breast
8	chr11:102471200-102475000	Enhancers	NH-A	brain
9	chr11:102471600-102475600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:102471800-102475600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:102471800-102475800	Weak transcription	Placenta	Placenta
12	chr11:102472400-102475200	Enhancers	Brain Substantia Nigra	brain
13	chr11:102472600-102475800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:102473000-102475000	Enhancers	Brain Cingulate Gyrus	brain
15	chr11:102473000-102475000	Enhancers	Brain Hippocampus Middle	brain
16	chr11:102473000-102475200	Enhancers	HSMMtube	muscle
17	chr11:102473200-102475000	Enhancers	NHDF-Ad	bronchial
18	chr11:102473200-102475800	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr11:102473200-102475800	Enhancers	A549	lung
20	chr11:102473200-102476600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:102473600-102474600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:102473600-102474600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:102473600-102474600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:102473600-102475000	Enhancers	Fetal Heart	heart
25	chr11:102473800-102474400	Enhancers	Brain Germinal Matrix	brain
26	chr11:102473800-102474400	Flanking Active TSS	Osteobl	bone
27	chr11:102473800-102474600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr11:102473800-102474600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:102473800-102474600	Enhancers	GM12878-XiMat	blood
30	chr11:102473800-102475000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:102473800-102475400	Enhancers	Right Atrium	heart
32	chr11:102473800-102476000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:102473800-102476000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:102473800-102476200	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr11:102474000-102474400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
36	chr11:102474000-102474600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:102474000-102474600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:102474000-102474600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr11:102474000-102474600	Enhancers	Placenta Amnion	Placenta Amnion
40	chr11:102474000-102474600	Enhancers	NHLF	lung
41	chr11:102474000-102474800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr11:102474000-102475000	Enhancers	Brain Angular Gyrus	brain
43	chr11:102474000-102475800	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr11:102474000-102476000	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr11:102474200-102474400	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr11:102474200-102474400	Flanking Active TSS	Brain Anterior Caudate	brain
47	chr11:102474200-102474400	Enhancers	HSMM	muscle
48	chr11:102474200-102474600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:102474200-102474600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:102474200-102474600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain

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