Variant report

Variant	rs1784430
Chromosome Location	chr11:102474813-102474814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr11:102474804-102474815	GM12878	blood:	n/a	n/a
2	FOSL1	chr11:102473559-102474836	HCT-116	colon:	n/a	chr11:102474541-102474551
3	POLR2A	chr11:102473802-102475033	HepG2	liver:	n/a	n/a
4	ZNF384	chr11:102474770-102474970	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000256916	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1612069	0.81[CEU][hapmap];0.84[AMR][1000 genomes]
rs1613596	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1615443	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1616349	0.86[ASN][1000 genomes]
rs1632456	0.84[AMR][1000 genomes]
rs1711399	0.81[CEU][hapmap];0.81[AMR][1000 genomes]
rs1711401	0.80[AMR][1000 genomes]
rs1711430	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1711432	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1711434	0.84[AMR][1000 genomes]
rs1711438	0.83[AMR][1000 genomes]
rs1711441	0.81[CEU][hapmap];0.80[AMR][1000 genomes]
rs1711443	0.85[CEU][hapmap];0.80[AMR][1000 genomes]
rs1784400	0.84[AMR][1000 genomes]
rs1784405	0.81[CEU][hapmap];0.84[AMR][1000 genomes]
rs1784407	0.81[CEU][hapmap];0.84[AMR][1000 genomes]
rs1784409	0.80[AMR][1000 genomes]
rs1784410	0.80[AMR][1000 genomes]
rs1784428	0.85[CEU][hapmap];0.83[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1784431	0.92[CEU][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1784432	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1784433	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1784434	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1784435	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1784436	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1784437	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1784438	0.82[CEU][hapmap];0.85[AMR][1000 genomes]
rs1784439	0.82[CEU][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1784440	0.84[AMR][1000 genomes]
rs1784441	0.83[AMR][1000 genomes]
rs1784442	0.81[CEU][hapmap]
rs1784444	0.84[CEU][hapmap];0.81[AMR][1000 genomes]
rs1784445	0.82[CEU][hapmap];0.81[AMR][1000 genomes]
rs1784446	0.81[AMR][1000 genomes]
rs1784447	0.81[AMR][1000 genomes]
rs1784449	0.82[CEU][hapmap]
rs2280211	0.91[CHB][hapmap]
rs2459479	0.84[AMR][1000 genomes]
rs2459480	0.84[AMR][1000 genomes]
rs2509015	0.81[CEU][hapmap];0.84[AMR][1000 genomes]
rs2509017	0.84[AMR][1000 genomes]
rs2509018	0.82[CEU][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3781787	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102469200-102475800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:102469200-102476200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:102470000-102476000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:102470800-102475200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:102470800-102476000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:102471000-102476200	Enhancers	HMEC	breast
7	chr11:102471200-102475000	Enhancers	NH-A	brain
8	chr11:102471600-102475600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:102471800-102475600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:102471800-102475800	Weak transcription	Placenta	Placenta
11	chr11:102472400-102475200	Enhancers	Brain Substantia Nigra	brain
12	chr11:102472600-102475800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:102473000-102475000	Enhancers	Brain Cingulate Gyrus	brain
14	chr11:102473000-102475000	Enhancers	Brain Hippocampus Middle	brain
15	chr11:102473000-102475200	Enhancers	HSMMtube	muscle
16	chr11:102473200-102475000	Enhancers	NHDF-Ad	bronchial
17	chr11:102473200-102475800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr11:102473200-102475800	Enhancers	A549	lung
19	chr11:102473200-102476600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:102473600-102475000	Enhancers	Fetal Heart	heart
21	chr11:102473800-102475000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:102473800-102475400	Enhancers	Right Atrium	heart
23	chr11:102473800-102476000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:102473800-102476000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:102473800-102476200	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr11:102474000-102475000	Enhancers	Brain Angular Gyrus	brain
27	chr11:102474000-102475800	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr11:102474000-102476000	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr11:102474200-102475000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:102474200-102475200	Weak transcription	NHEK	skin
31	chr11:102474200-102475400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:102474400-102475000	Enhancers	Brain Anterior Caudate	brain
33	chr11:102474400-102475000	Enhancers	Pancreas	Pancrea
34	chr11:102474600-102475000	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr11:102474600-102475400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:102474600-102475600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr11:102474600-102475800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:102474600-102476000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:102474600-102476000	Enhancers	HSMM	muscle
40	chr11:102474600-102486400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:102474800-102475000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr11:102474800-102475200	Enhancers	H1 Cell Line	embryonic stem cell
43	chr11:102474800-102475200	Enhancers	HepG2	liver
44	chr11:102474800-102475800	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr11:102474800-102475800	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr11:102474800-102476000	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr11:102474800-102476200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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