Variant report

Variant	rs1784410
Chromosome Location	chr11:102452996-102452997
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1612069	0.96[CEU][hapmap];0.98[GIH][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1613596	0.80[EUR][1000 genomes]
rs1615443	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1631411	0.83[JPT][hapmap]
rs1632456	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1711399	0.96[CEU][hapmap];0.98[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1711400	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1711401	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1711403	1.00[ASN][1000 genomes]
rs1711430	0.85[CEU][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1711432	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1711434	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1711437	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1711438	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1711439	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1711441	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1711442	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1711443	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1784400	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1784405	0.96[CEU][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1784407	0.96[CEU][hapmap];0.98[GIH][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1784409	1.00[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1784428	0.84[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1784430	0.80[AMR][1000 genomes]
rs1784431	0.85[CEU][hapmap];0.90[CHD][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1784432	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1784433	0.87[CEU][hapmap];0.81[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1784434	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1784435	0.96[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1784436	0.96[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1784437	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1784438	0.96[CEU][hapmap];0.82[CHB][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1784439	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1784440	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1784441	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1784442	0.95[CEU][hapmap]
rs1784444	0.96[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1784445	0.96[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1784446	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1784447	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1784449	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1784451	1.00[ASN][1000 genomes]
rs2459479	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2459480	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2509015	0.96[CEU][hapmap];0.98[GIH][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2509016	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2509017	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2509018	0.96[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2701961	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2846369	1.00[ASN][1000 genomes]
rs751547	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102447600-102453000	Weak transcription	HUVEC	blood vessel
2	chr11:102448800-102453000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:102449000-102453200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:102449200-102453000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr11:102449200-102453000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr11:102450600-102453400	Enhancers	GM12878-XiMat	blood
7	chr11:102451200-102453600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:102451400-102453800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:102451400-102462600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:102451600-102454200	Weak transcription	HMEC	breast
11	chr11:102451600-102463600	Weak transcription	NHDF-Ad	bronchial

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