Variant report

Variant	rs1784432
Chromosome Location	chr11:102474196-102474197
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr11:102473697-102474355	HepG2	liver:	n/a	n/a
2	EP300	chr11:102473728-102474196	SK-N-SH_RA	brain:	n/a	n/a
3	FOXA2	chr11:102473735-102474215	HepG2	liver:	n/a	n/a
4	POLR2A	chr11:102473776-102474280	U87	brain:	n/a	n/a
5	PBX3	chr11:102473600-102474313	SK-N-SH	brain:	n/a	n/a
6	ARID3A	chr11:102473645-102474287	HepG2	liver:	n/a	n/a
7	CBX3	chr11:102473652-102474760	HCT-116	colon:	n/a	n/a
8	REST	chr11:102473866-102474310	PANC-1	pancreas:	n/a	chr11:102474124-102474133 chr11:102474127-102474135
9	MAX	chr11:102473550-102474468	HCT-116	colon:	n/a	n/a
10	POLR2A	chr11:102473638-102474289	PANC-1	pancreas:	n/a	n/a
11	TBP	chr11:102473747-102474276	HepG2	liver:	n/a	n/a
12	JUND	chr11:102473559-102474689	HCT-116	colon:	n/a	chr11:102474541-102474551
13	POLR2A	chr11:102473738-102474199	HCT-116	colon:	n/a	n/a
14	SP1	chr11:102473618-102474707	HCT-116	colon:	n/a	n/a
15	POLR2A	chr11:102473739-102474621	PANC-1	pancreas:	n/a	n/a
16	JUND	chr11:102473600-102474327	SK-N-SH	brain:	n/a	n/a
17	RAD21	chr11:102473853-102474320	HepG2	liver:	n/a	n/a
18	GATA3	chr11:102473516-102474250	SK-N-SH	brain:	n/a	n/a
19	CBX3	chr11:102473589-102474799	HCT-116	colon:	n/a	n/a
20	EP300	chr11:102473623-102474466	HepG2	liver:	n/a	n/a
21	EBF1	chr11:102473819-102474222	GM12878	blood:	n/a	n/a
22	TCF7L2	chr11:102473431-102474330	PANC-1	pancreas:	n/a	chr11:102474027-102474041
23	POLR2A	chr11:102473771-102474251	U87	brain:	n/a	n/a
24	MAX	chr11:102473797-102474232	HepG2	liver:	n/a	n/a
25	REST	chr11:102473878-102474282	SK-N-SH	brain:	n/a	chr11:102474124-102474133 chr11:102474127-102474135
26	TEAD4	chr11:102473650-102474330	SK-N-SH	brain:	n/a	n/a
27	TCF12	chr11:102473507-102474377	SK-N-SH	brain:	n/a	chr11:102473938-102473946
28	RFX5	chr11:102473785-102474214	HepG2	liver:	n/a	chr11:102473903-102473918
29	PBX3	chr11:102473685-102474296	SK-N-SH	brain:	n/a	n/a
30	MYBL2	chr11:102473734-102474346	HepG2	liver:	n/a	n/a
31	EP300	chr11:102473580-102474704	SK-N-SH	brain:	n/a	n/a
32	JUND	chr11:102473747-102474223	HepG2	liver:	n/a	n/a
33	FOSL1	chr11:102473559-102474836	HCT-116	colon:	n/a	chr11:102474541-102474551
34	SIN3AK20	chr11:102473703-102474384	HCT-116	colon:	n/a	n/a
35	FOSL2	chr11:102473626-102474245	SK-N-SH	brain:	n/a	n/a
36	TCF12	chr11:102473696-102474352	SK-N-SH	brain:	n/a	chr11:102473938-102473946
37	MXI1	chr11:102473797-102474242	HepG2	liver:	n/a	n/a
38	MAX	chr11:102473625-102474611	HCT-116	colon:	n/a	n/a
39	TEAD4	chr11:102473695-102474298	HCT-116	colon:	n/a	n/a
40	MYBL2	chr11:102473632-102474286	HepG2	liver:	n/a	n/a
41	REST	chr11:102473848-102474224	PFSK-1	brain:	n/a	chr11:102474124-102474133 chr11:102474127-102474135
42	JUND	chr11:102473552-102474789	HCT-116	colon:	n/a	chr11:102474541-102474551
43	GATA3	chr11:102473590-102474319	SK-N-SH	brain:	n/a	n/a
44	REST	chr11:102473826-102474207	PANC-1	pancreas:	n/a	chr11:102474124-102474133 chr11:102474127-102474135
45	TEAD4	chr11:102473686-102474343	HCT-116	colon:	n/a	n/a
46	MAFK	chr11:102473834-102474640	HepG2	liver:	n/a	n/a
47	CEBPB	chr11:102473631-102474652	HCT-116	colon:	n/a	n/a
48	FOXA1	chr11:102473794-102474204	HepG2	liver:	n/a	n/a
49	HDAC2	chr11:102473822-102474211	HepG2	liver:	n/a	chr11:102474077-102474096
50	HEY1	chr11:102473998-102474271	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000256916	TF binding region

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1612069	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1613596	0.87[EUR][1000 genomes]
rs1615443	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1632456	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1711399	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1711400	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1711401	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1711403	0.88[ASN][1000 genomes]
rs1711430	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1711432	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1711434	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1711437	0.85[ASN][1000 genomes]
rs1711438	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1711439	0.85[ASN][1000 genomes]
rs1711441	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1711442	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1711443	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1784400	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1784405	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1784407	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1784409	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1784410	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1784428	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1784430	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1784431	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1784433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784434	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784435	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784436	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784437	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784438	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1784439	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1784440	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1784441	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1784444	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1784445	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1784446	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1784447	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1784449	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1784451	0.88[ASN][1000 genomes]
rs2459479	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2459480	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2509015	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2509016	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2509017	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2509018	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2701961	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2846369	0.88[ASN][1000 genomes]
rs751547	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102466800-102474200	Enhancers	HepG2	liver
2	chr11:102469200-102475800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:102469200-102476200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:102469800-102474400	Weak transcription	Pancreas	Pancrea
5	chr11:102470000-102476000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:102470800-102475200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:102470800-102476000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:102471000-102474200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:102471000-102476200	Enhancers	HMEC	breast
10	chr11:102471200-102475000	Enhancers	NH-A	brain
11	chr11:102471600-102475600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:102471800-102475600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:102471800-102475800	Weak transcription	Placenta	Placenta
14	chr11:102472400-102475200	Enhancers	Brain Substantia Nigra	brain
15	chr11:102472600-102475800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:102473000-102475000	Enhancers	Brain Cingulate Gyrus	brain
17	chr11:102473000-102475000	Enhancers	Brain Hippocampus Middle	brain
18	chr11:102473000-102475200	Enhancers	HSMMtube	muscle
19	chr11:102473200-102474200	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr11:102473200-102475000	Enhancers	NHDF-Ad	bronchial
21	chr11:102473200-102475800	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr11:102473200-102475800	Enhancers	A549	lung
23	chr11:102473200-102476600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:102473600-102474600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:102473600-102474600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:102473600-102474600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:102473600-102475000	Enhancers	Fetal Heart	heart
28	chr11:102473800-102474200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:102473800-102474200	Active TSS	Brain Anterior Caudate	brain
30	chr11:102473800-102474200	Enhancers	NHEK	skin
31	chr11:102473800-102474400	Enhancers	Brain Germinal Matrix	brain
32	chr11:102473800-102474400	Flanking Active TSS	Osteobl	bone
33	chr11:102473800-102474600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr11:102473800-102474600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:102473800-102474600	Enhancers	GM12878-XiMat	blood
36	chr11:102473800-102475000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:102473800-102475400	Enhancers	Right Atrium	heart
38	chr11:102473800-102476000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr11:102473800-102476000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:102473800-102476200	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr11:102474000-102474200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:102474000-102474200	Enhancers	Left Ventricle	heart
43	chr11:102474000-102474200	Flanking Active TSS	HSMM	muscle
44	chr11:102474000-102474400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
45	chr11:102474000-102474600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr11:102474000-102474600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr11:102474000-102474600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr11:102474000-102474600	Enhancers	Placenta Amnion	Placenta Amnion
49	chr11:102474000-102474600	Enhancers	NHLF	lung
50	chr11:102474000-102474800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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