Variant report

Variant	rs10895595
Chromosome Location	chr11:104031450-104031451
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10791667	0.89[CEU][hapmap];0.94[GIH][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs10791668	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs10895578	0.89[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs10895579	0.87[EUR][1000 genomes]
rs10895581	0.89[CEU][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs10895583	0.89[CEU][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs10895587	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs10895588	0.83[EUR][1000 genomes]
rs10895589	0.89[EUR][1000 genomes]
rs10895590	0.83[EUR][1000 genomes]
rs10895593	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10895597	1.00[CEU][hapmap];0.89[MEX][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11226201	0.87[EUR][1000 genomes]
rs11226205	0.86[EUR][1000 genomes]
rs11226207	1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[TSI][hapmap];0.95[EUR][1000 genomes]
rs11226209	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12226700	0.89[CEU][hapmap];0.94[GIH][hapmap];0.82[TSI][hapmap];0.88[EUR][1000 genomes]
rs12274835	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs1384784	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs361271	0.89[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs55998450	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58997101	0.87[EUR][1000 genomes]
rs68112497	0.87[EUR][1000 genomes]
rs7119186	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7126071	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs724082	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7942350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7943401	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs8181543	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs8181546	0.88[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760322	chr11:103760085-104374141	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1051448	chr11:103864766-104274112	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv541157	chr11:103864766-104274112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1043976	chr11:103881236-104526403	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1040367	chr11:103956747-104440470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv430426	chr11:103978540-104099790	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10895595	DCUN1D5	cis	parietal	SCAN
rs10895595	MMP10	cis	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104013600-104033600	Weak transcription	Left Ventricle	heart
2	chr11:104013800-104033600	Weak transcription	Pancreas	Pancrea
3	chr11:104019600-104032200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:104024400-104032800	Weak transcription	A549	lung
5	chr11:104024600-104033400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr11:104025400-104032200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:104025400-104033000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:104025400-104033600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr11:104025600-104032800	Weak transcription	Fetal Brain Female	brain
10	chr11:104025600-104033400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:104026400-104033400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:104027400-104033800	Weak transcription	Gastric	stomach
13	chr11:104028200-104033200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:104029000-104032800	Weak transcription	Brain Germinal Matrix	brain
15	chr11:104030200-104032800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr11:104030200-104033000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:104030400-104033200	Enhancers	Fetal Heart	heart
18	chr11:104030800-104035400	Active TSS	Ovary	ovary
19	chr11:104031200-104032600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:104031200-104033400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr11:104031400-104031600	Flanking Active TSS	Aorta	Aorta

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