Variant report

Variant	rs724082
Chromosome Location	chr11:104038605-104038606
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10791667	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs10791668	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs10895578	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs10895579	0.87[EUR][1000 genomes]
rs10895581	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs10895583	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs10895587	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs10895588	0.83[EUR][1000 genomes]
rs10895589	0.89[EUR][1000 genomes]
rs10895590	0.83[EUR][1000 genomes]
rs10895593	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10895595	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10895597	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11226201	0.87[EUR][1000 genomes]
rs11226205	0.86[EUR][1000 genomes]
rs11226207	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11226209	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12226700	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs12274835	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs1384784	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs361271	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs55998450	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58997101	0.87[EUR][1000 genomes]
rs68112497	0.87[EUR][1000 genomes]
rs7119186	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7126071	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7942350	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7943401	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs8181543	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs8181546	0.89[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760322	chr11:103760085-104374141	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1051448	chr11:103864766-104274112	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv541157	chr11:103864766-104274112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1043976	chr11:103881236-104526403	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1040367	chr11:103956747-104440470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv430426	chr11:103978540-104099790	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104035400-104039400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:104035800-104039600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:104036000-104038800	Weak transcription	Brain Germinal Matrix	brain

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