Variant report

Variant	rs10896288
Chromosome Location	chr11:67797705-67797706
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:67797048-67798791	H1-hESC	embryonic stem cell:	n/a	n/a
2	CEBPB	chr11:67797700-67797734	H1-hESC	embryonic stem cell:	n/a	n/a
3	GABPA	chr11:67797449-67798640	A549	lung:	n/a	chr11:67798366-67798380 chr11:67798369-67798380 chr11:67798369-67798383 chr11:67798369-67798378 chr11:67798377-67798386 chr11:67798371-67798380
4	MXI1	chr11:67797608-67798674	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr11:67797629-67797950	H1-hESC	embryonic stem cell:	n/a	n/a
6	MXI1	chr11:67797397-67798916	IMR90	lung:	n/a	n/a
7	POLR2A	chr11:67797660-67798635	K562	blood:	n/a	n/a
8	GABPA	chr11:67797604-67798290	Hela-S3	cervix:	n/a	n/a
9	HA-E2F1	chr11:67797547-67798624	MCF-7	breast:	n/a	chr11:67798370-67798379 chr11:67798009-67798018 chr11:67798062-67798071
10	HEY1	chr11:67797599-67797955	HepG2	liver:	n/a	n/a
11	TBP	chr11:67797650-67798455	H1-hESC	embryonic stem cell:	n/a	n/a
12	CHD1	chr11:67797661-67798515	GM12878	blood:	n/a	n/a
13	MAFK	chr11:67797659-67798196	K562	blood:	n/a	n/a
14	MYC	chr11:67797577-67798848	K562	blood:	n/a	n/a
15	POLR2A	chr11:67796701-67799318	K562	blood:	n/a	n/a
16	POLR2A	chr11:67797650-67798593	HCT-116	colon:	n/a	n/a
17	GABPA	chr11:67797614-67798560	SK-N-SH	brain:	n/a	chr11:67798366-67798380 chr11:67798369-67798380 chr11:67798369-67798383 chr11:67798369-67798378 chr11:67798377-67798386 chr11:67798371-67798380
18	POLR2A	chr11:67797609-67798904	HL-60	blood:	n/a	n/a
19	POLR2A	chr11:67797610-67797937	H1-hESC	embryonic stem cell:	n/a	n/a
20	TAF1	chr11:67797596-67798787	PFSK-1	brain:	n/a	n/a
21	YY1	chr11:67797606-67798453	K562	blood:	n/a	chr11:67797966-67797978 chr11:67797967-67797975 chr11:67798270-67798284 chr11:67797956-67797978 chr11:67797961-67797980 chr11:67797968-67797978 chr11:67798369-67798383
22	POLR2A	chr11:67796226-67798723	Hela-S3	cervix:	n/a	n/a
23	GABPA	chr11:67797582-67798534	SK-N-SH	brain:	n/a	chr11:67798366-67798380 chr11:67798369-67798380 chr11:67798369-67798383 chr11:67798369-67798378 chr11:67798377-67798386 chr11:67798371-67798380
24	POLR2A	chr11:67797619-67798626	HepG2	liver:	n/a	n/a
25	TAF1	chr11:67797611-67798656	H1-neurons	neurons:	n/a	n/a
26	GTF2F1	chr11:67797641-67798517	Hela-S3	cervix:	n/a	n/a
27	POLR2A	chr11:67797688-67798553	HUVEC	blood vessel:	n/a	n/a
28	GABPA	chr11:67797411-67798461	K562	blood:	n/a	chr11:67798366-67798380 chr11:67798369-67798380 chr11:67798369-67798383 chr11:67798369-67798378 chr11:67798377-67798386 chr11:67798371-67798380
29	POLR2A	chr11:67797553-67798664	H1-neurons	neurons:	n/a	n/a
30	JUND	chr11:67797614-67798465	A549	lung:	n/a	chr11:67798064-67798073 chr11:67798011-67798020
31	YY1	chr11:67797559-67798416	SK-N-SH_RA	brain:	n/a	chr11:67797966-67797978 chr11:67797967-67797975 chr11:67798270-67798284 chr11:67797956-67797978 chr11:67797961-67797980 chr11:67797968-67797978 chr11:67798369-67798383
32	MAX	chr11:67796027-67798933	A549	lung:	n/a	n/a
33	SP1	chr11:67797503-67798580	A549	lung:	n/a	chr11:67798061-67798082 chr11:67797904-67797913 chr11:67797839-67797849 chr11:67797918-67797932 chr11:67797904-67797914 chr11:67798008-67798029
34	RAD21	chr11:67797702-67797732	Hela-S3	cervix:	n/a	n/a
35	POLR2A	chr11:67797660-67797939	SK-N-SH	brain:	n/a	n/a
36	E2F4	chr11:67797606-67798408	MCF10A-Er-Src	breast:	n/a	chr11:67798370-67798379 chr11:67798009-67798018 chr11:67798062-67798071
37	TAF1	chr11:67797636-67797943	GM12878	blood:	n/a	n/a
38	TBP	chr11:67797624-67798553	Hela-S3	cervix:	n/a	n/a
39	POLR2A	chr11:67797586-67797918	GM12878	blood:	n/a	n/a
40	MAX	chr11:67797618-67798554	HepG2	liver:	n/a	n/a
41	MAZ	chr11:67797702-67798437	K562	blood:	n/a	n/a
42	MYC	chr11:67797674-67797865	H1-hESC	embryonic stem cell:	n/a	n/a
43	POLR2A	chr11:67797615-67797914	GM12878	blood:	n/a	n/a
44	GABPA	chr11:67797689-67798428	GM12878	blood:	n/a	chr11:67798366-67798380 chr11:67798369-67798380 chr11:67798369-67798383 chr11:67798369-67798378 chr11:67798377-67798386 chr11:67798371-67798380
45	GABPA	chr11:67797458-67798375	HL-60	blood:	n/a	n/a
46	REST	chr11:67797294-67798916	H1-neurons	neurons:	n/a	chr11:67798444-67798464 chr11:67798435-67798443
47	ZBTB7A	chr11:67797589-67798005	ECC-1	luminal epithelium:	n/a	n/a
48	GABPA	chr11:67797427-67798682	MCF-7	breast:	n/a	chr11:67798366-67798380 chr11:67798369-67798380 chr11:67798369-67798383 chr11:67798369-67798378 chr11:67798377-67798386 chr11:67798371-67798380
49	SP1	chr11:67797606-67798272	H1-hESC	embryonic stem cell:	n/a	chr11:67798061-67798082 chr11:67797904-67797913 chr11:67797839-67797849 chr11:67797918-67797932 chr11:67797904-67797914 chr11:67798008-67798029
50	MAX	chr11:67797587-67798818	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:67797684-67797734	HUVEC	blood vessel:	n/a
2	chr11:67797684-67797734	MCF10A-Er-Src	breast:	n/a
3	chr11:67797684-67797734	A549	lung:	n/a
4	chr11:67797684-67797734	NB4	blood:	n/a
5	chr11:67797684-67797734	PrEC	prostate:	n/a
6	chr11:67797684-67797734	NH-A	brain:	n/a
7	chr11:67797684-67797734	SK-N-MC	brain:	n/a
8	chr11:67797684-67797734	MCF-7	breast:	n/a
9	chr11:67797684-67797734	CMK	blood:	n/a
10	chr11:67797684-67797734	NHDF-neo	bronchial:	n/a
11	chr11:67797684-67797734	PFSK-1	brain:	n/a
12	chr11:67797684-67797734	AoSMC	blood vessel:	n/a
13	chr11:67797684-67797734	Hela-S3	cervix:	n/a
14	chr11:67797684-67797734	SK-N-SH	brain:	n/a
15	chr11:67797684-67797734	HEK293	kidney:	embryo
16	chr11:67797684-67797734	GM12891	blood:	n/a
17	chr11:67797684-67797734	GM12878	blood:	n/a
18	chr11:67797684-67797734	Jurkat	blood:	n/a
19	chr11:67797684-67797734	BJ	skin:	n/a
20	chr11:67797684-67797734	U87	brain:	n/a
21	chr11:67797684-67797734	NHBE	bronchial:	n/a
22	chr11:67797684-67797734	ProgFib	skin:	n/a
23	chr11:67797684-67797734	ovcar-3	ovarian:	n/a
24	chr11:67797684-67797734	ECC-1	luminal epithelium:	n/a
25	chr11:67797684-67797734	HCT-116	colon:	n/a
26	chr11:67797684-67797734	AG09309	skin:	n/a
27	chr11:67797684-67797734	SK-N-SH_RA	brain:	n/a
28	chr11:67797684-67797734	NT2-D1	testis:	n/a
29	chr11:67797684-67797734	SKMC	muscle:	n/a
30	chr11:67797684-67797734	AG10803	skin:	n/a
31	chr11:67797684-67797734	HCM	heart:	n/a
32	chr11:67797684-67797734	RPTEC	kidney:	n/a
33	chr11:67797684-67797734	HNPCEpiC	eye:	n/a
34	chr11:67797684-67797734	HCPEpiC	choroid plexus:	n/a
35	chr11:67797684-67797734	HPAEpiC	pulmonary alveolar:	n/a
36	chr11:67797684-67797734	HMEC	breast:	n/a
37	chr11:67797684-67797734	AG09319	gingival:	n/a
38	chr11:67797684-67797734	HepG2	liver:	n/a
39	chr11:67797684-67797734	HRE	kidney:	n/a
40	chr11:67797684-67797734	HRCEpiC	kidney:	n/a
41	chr11:67797684-67797734	AG04449	skin:	fetal
42	chr11:67797684-67797734	Hepatocyte	liver:	n/a
43	chr11:67797684-67797734	GM19239	blood:	n/a
44	chr11:67797684-67797734	GM06990	blood:	n/a
45	chr11:67797684-67797734	SAEC	small airway:	n/a
46	chr11:67797684-67797734	IMR90	lung:	fetal
47	chr11:67797684-67797734	HRPEpiC	eye:	n/a
48	chr11:67797684-67797734	BE2_C	brain:	n/a
49	chr11:67797684-67797734	HAEpiC	amniotic membrane:	n/a
50	chr11:67797684-67797734	T-47D	breast:	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:67770133..67772267-chr11:67796388..67798189,2	K562	blood:
2	chr11:67797558..67799338-chr11:67885991..67888361,2	K562	blood:
3	chr11:67782340..67787471-chr11:67792467..67797834,9	K562	blood:
4	chr11:67796203..67799766-chr11:67888971..67890534,5	MCF-7	breast:
5	chr11:67796548..67799452-chr11:67888689..67890440,2	K562	blood:
6	chr11:67795954..67799796-chr11:67979267..67982361,5	MCF-7	breast:
7	chr11:67796973..67799745-chr11:67886868..67889859,3	MCF-7	breast:

Variant related genes	Relation type
NDUFS8	TF binding region
MIR4691	TF binding region
MIR4691	CpG island
NDUFS8	CpG island
ENSG00000255236	Chromatin interaction
ENSG00000110721	Chromatin interaction
ENSG00000110057	Chromatin interaction
ENSG00000110066	Chromatin interaction
ENSG00000006534	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs105147	0.96[CEU][hapmap];0.86[CHB][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1636207	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs308338	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs308342	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4147780	0.80[JPT][hapmap]
rs4646809	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs572574	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs581105	0.82[CEU][hapmap]
rs598156	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036101	chr11:67346813-67828351	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	nsv541079	chr11:67346813-67828351	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
3	nsv468606	chr11:67352689-67816936	Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
4	nsv555269	chr11:67352689-67816936	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
5	nsv427892	chr11:67451649-67926562	Bivalent Enhancer Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
6	esv2757450	chr11:67472905-67891289	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	112 gene(s)	inside rSNPs	diseases
7	esv2759835	chr11:67472905-67891289	Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	112 gene(s)	inside rSNPs	diseases
8	esv2758275	chr11:67524937-67859490	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
9	nsv469856	chr11:67639037-67859490	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
10	nsv482760	chr11:67639037-67859490	Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
11	nsv1047567	chr11:67747160-67819790	Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
12	nsv8836	chr11:67752879-67819799	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
13	nsv897836	chr11:67757350-67816936	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
14	nsv897837	chr11:67757350-67821036	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
15	nsv897838	chr11:67757350-67833543	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
16	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
17	nsv1050471	chr11:67764068-67821610	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
18	nsv468614	chr11:67765056-67799926	ZNF genes & repeats Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
19	nsv897840	chr11:67765056-67804605	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
20	nsv468615	chr11:67765056-67816936	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
21	nsv555278	chr11:67765056-67816936	Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
22	nsv897841	chr11:67765056-67816936	Bivalent Enhancer Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
23	nsv469964	chr11:67765056-67821036	Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
24	nsv897842	chr11:67765056-67821036	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
25	nsv897843	chr11:67765056-67833543	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
26	nsv1046054	chr11:67768796-67819790	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	60 gene(s)	inside rSNPs	diseases
27	nsv897845	chr11:67774231-67821036	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
28	nsv897847	chr11:67776465-67804605	Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
29	nsv555279	chr11:67789553-67816936	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
30	nsv897848	chr11:67789837-67816936	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
31	nsv897849	chr11:67789837-67821036	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
32	nsv897850	chr11:67793014-67805381	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
33	nsv555280	chr11:67793014-67816936	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
34	nsv897851	chr11:67793448-67821036	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
35	nsv897852	chr11:67795066-67833543	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
36	nsv555281	chr11:67796691-67821036	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs10896288	CHKA	cis	brain	BrainEAC
rs10896288	CHKA	cis	hippocampus	BrainEAC
rs10896288	CHKA	cis	cerebellar cortex	BrainEAC
rs10896288	CHKA	cis	frontal cortex	BrainEAC
rs10896288	CHKA	cis	intralobular white matter	BrainEAC
rs10896288	CHKA	cis	inferior olivary nucleus	BrainEAC

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67796600-67797800	Enhancers	Fetal Heart	heart
2	chr11:67796600-67798400	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr11:67796800-67797800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr11:67796800-67797800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr11:67796800-67797800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
6	chr11:67796800-67797800	Flanking Active TSS	Stomach Smooth Muscle	stomach
7	chr11:67796800-67797800	Flanking Active TSS	HMEC	breast
8	chr11:67796800-67798800	Active TSS	Brain Angular Gyrus	brain
9	chr11:67797000-67797800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:67797000-67797800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:67797000-67797800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
12	chr11:67797000-67797800	Flanking Active TSS	Adipose Nuclei	Adipose
13	chr11:67797000-67797800	Flanking Active TSS	Fetal Muscle Trunk	muscle
14	chr11:67797000-67798600	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr11:67797000-67799000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:67797000-67799000	Active TSS	Fetal Kidney	kidney
17	chr11:67797000-67799400	Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr11:67797200-67797800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
19	chr11:67797200-67798800	Active TSS	Brain Anterior Caudate	brain
20	chr11:67797200-67798800	Active TSS	Fetal Brain Female	brain
21	chr11:67797200-67799000	Active TSS	H9 Cell Line	embryonic stem cell
22	chr11:67797200-67799000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:67797200-67799000	Active TSS	HSMM	muscle
24	chr11:67797200-67799200	Active TSS	HSMMtube	muscle
25	chr11:67797200-67799400	Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr11:67797200-67799400	Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr11:67797200-67799600	Active TSS	iPS-15b Cell Line	embryonic stem cell
28	chr11:67797400-67797800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:67797400-67797800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
30	chr11:67797400-67797800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
31	chr11:67797400-67797800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:67797400-67797800	Flanking Active TSS	Thymus	Thymus
33	chr11:67797400-67797800	Flanking Active TSS	HUVEC	blood vessel
34	chr11:67797400-67797800	Flanking Active TSS	NH-A	brain
35	chr11:67797400-67798400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:67797400-67798400	Active TSS	Rectal Mucosa Donor 31	rectum
37	chr11:67797400-67798400	Active TSS	HepG2	liver
38	chr11:67797400-67798600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:67797400-67798600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:67797400-67798600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr11:67797400-67798600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:67797400-67798600	Active TSS	Brain Germinal Matrix	brain
43	chr11:67797400-67798600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
44	chr11:67797400-67798600	Active TSS	Duodenum Mucosa	Duodenum
45	chr11:67797400-67798600	Active TSS	Placenta Amnion	Placenta Amnion
46	chr11:67797400-67798600	Active TSS	Dnd41	blood
47	chr11:67797400-67798600	Active TSS	Hela-S3	cervix
48	chr11:67797400-67798800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:67797400-67798800	Active TSS	Breast Myoepithelial Primary Cells	Breast
50	chr11:67797400-67798800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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