Variant report

Variant	rs10896740
Chromosome Location	chr11:58049572-58049573
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10736689	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10750890	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10750891	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10792156	0.95[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10792157	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10792158	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10792163	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10792164	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10792167	0.82[AMR][1000 genomes]
rs10896723	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10896733	0.95[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap]
rs10896743	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10896745	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10896751	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10896752	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10896767	0.82[AMR][1000 genomes]
rs10896768	0.82[AMR][1000 genomes]
rs11229332	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229334	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229337	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229351	0.83[AMR][1000 genomes]
rs11229354	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11229356	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11229367	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11229368	0.81[AMR][1000 genomes]
rs11229376	0.82[AMR][1000 genomes]
rs11603523	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12794193	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12806327	0.95[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap]
rs1938648	0.82[AMR][1000 genomes]
rs1938661	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2003230	0.82[AMR][1000 genomes]
rs2186408	0.82[AMR][1000 genomes]
rs2211942	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4127350	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4127351	0.82[AMR][1000 genomes]
rs4127352	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4453250	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4644660	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4939192	0.95[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4939204	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6591470	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7105115	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7112250	0.82[AMR][1000 genomes]
rs7115653	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7117845	0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7129144	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs746248	0.82[AMR][1000 genomes]
rs7480112	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926438	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7934850	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7944257	0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7944352	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7948107	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs947785	0.95[CEU][hapmap];0.80[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1039453	chr11:57924680-58119650	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv541051	chr11:57924680-58119650	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58044600-58059600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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