Variant report

Variant	rs947785
Chromosome Location	chr11:58053501-58053502
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10736689	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10750890	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10750891	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10792156	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10792157	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10792158	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10792163	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10792164	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10792167	0.85[AMR][1000 genomes]
rs10896723	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10896733	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs10896740	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10896743	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10896745	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10896751	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10896752	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10896767	0.85[AMR][1000 genomes]
rs10896768	0.85[AMR][1000 genomes]
rs11229332	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229334	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229337	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229351	0.86[AMR][1000 genomes]
rs11229354	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11229356	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11229367	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11229368	0.84[AMR][1000 genomes]
rs11229376	0.85[AMR][1000 genomes]
rs11603523	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12794193	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12806327	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs1938648	0.85[AMR][1000 genomes]
rs1938661	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2003230	0.85[AMR][1000 genomes]
rs2186408	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2211942	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4127350	0.85[AMR][1000 genomes]
rs4127351	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4127352	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4453250	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4581466	0.85[JPT][hapmap]
rs4644660	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4939192	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs4939204	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6591470	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7105115	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7112250	0.85[AMR][1000 genomes]
rs7115653	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7117845	0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7129144	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs746248	0.85[AMR][1000 genomes]
rs7480112	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7926438	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7934850	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7944257	0.82[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7944352	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7948107	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1039453	chr11:57924680-58119650	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv541051	chr11:57924680-58119650	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58044600-58059600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:58052200-58053800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:58052600-58053800	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr11:58053200-58053600	Enhancers	Duodenum Mucosa	Duodenum
5	chr11:58053200-58053800	Enhancers	Fetal Intestine Large	intestine
6	chr11:58053200-58053800	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links