Variant report

Variant	rs10897399
Chromosome Location	chr11:63008750-63008751
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr11:63008042-63009047	HepG2	liver:	n/a	n/a
2	BHLHE40	chr11:63008262-63008801	HepG2	liver:	n/a	n/a
3	NFIC	chr11:63008154-63008906	HepG2	liver:	n/a	n/a
4	RCOR1	chr11:63008197-63008826	HepG2	liver:	n/a	n/a
5	FOXA1	chr11:63008138-63008943	HepG2	liver:	n/a	chr11:63008369-63008381
6	CEBPB	chr11:63008500-63008805	HepG2	liver:	n/a	chr11:63008635-63008646
7	EP300	chr11:63008076-63008800	HepG2	liver:	n/a	chr11:63008632-63008646
8	HNF4A	chr11:63008464-63008876	HepG2	liver:	n/a	chr11:63008773-63008781
9	HDAC2	chr11:63008148-63008890	HepG2	liver:	n/a	chr11:63008372-63008381
10	CEBPB	chr11:63008170-63008883	HepG2	liver:	n/a	chr11:63008635-63008646
11	RXRA	chr11:63008156-63008842	HepG2	liver:	n/a	n/a
12	MYBL2	chr11:63008018-63008992	HepG2	liver:	n/a	n/a
13	CEBPB	chr11:63008163-63008912	HepG2	liver:	n/a	chr11:63008635-63008646
14	MAX	chr11:63008057-63009114	HepG2	liver:	n/a	n/a
15	HDAC2	chr11:63008208-63008839	HepG2	liver:	n/a	chr11:63008372-63008381
16	CEBPB	chr11:63008162-63008869	HepG2	liver:	n/a	chr11:63008635-63008646
17	SIN3AK20	chr11:63008022-63008758	MCF-7	breast:	n/a	n/a
18	MYBL2	chr11:63008068-63009000	HepG2	liver:	n/a	n/a
19	SP1	chr11:63008064-63008945	HepG2	liver:	n/a	n/a
20	HNF4G	chr11:63008164-63008794	HepG2	liver:	n/a	chr11:63008773-63008781
21	TEAD4	chr11:63008092-63008928	HepG2	liver:	n/a	n/a
22	ARID3A	chr11:63008154-63009152	HepG2	liver:	n/a	n/a
23	HNF4A	chr11:63008134-63008834	HepG2	liver:	n/a	chr11:63008773-63008781
24	FOXA1	chr11:63008021-63008894	HepG2	liver:	n/a	chr11:63008369-63008381
25	CEBPB	chr11:63008296-63008763	A549	lung:	n/a	chr11:63008635-63008646
26	FOXA2	chr11:63006379-63009069	HepG2	liver:	n/a	chr11:63008369-63008381
27	JUND	chr11:63008203-63008833	HepG2	liver:	n/a	n/a
28	EP300	chr11:63008279-63008806	HepG2	liver:	n/a	chr11:63008632-63008646
29	SMC3	chr11:63008236-63008806	HepG2	liver:	n/a	n/a
30	FOXA1	chr11:63008149-63008848	HepG2	liver:	n/a	chr11:63008369-63008381
31	FOSL2	chr11:63008125-63008851	HepG2	liver:	n/a	n/a
32	CEBPB	chr11:63008109-63008880	MCF-7	breast:	n/a	chr11:63008635-63008646
33	RAD21	chr11:63008328-63008850	HepG2	liver:	n/a	n/a
34	CEBPB	chr11:63008151-63008821	MCF-7	breast:	n/a	chr11:63008635-63008646
35	FOXA1	chr11:63008051-63008914	HepG2	liver:	n/a	chr11:63008369-63008381
36	FOXA2	chr11:63008089-63008912	HepG2	liver:	n/a	chr11:63008369-63008381
37	CEBPD	chr11:63008507-63008820	HepG2	liver:	n/a	n/a
38	MBD4	chr11:63008122-63008863	HepG2	liver:	n/a	n/a
39	EP300	chr11:63008163-63008981	HepG2	liver:	n/a	chr11:63008632-63008646
40	JUN	chr11:63008244-63008795	HepG2	liver:	n/a	chr11:63008632-63008645
41	MBD4	chr11:63008097-63008975	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:62992812..62995599-chr11:63006882..63009821,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000256863	TF binding region
CCND2P1	TF binding region

Extended variants
information (count: 187 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:178)

rs_ID	r²[population]
rs10750995	0.97[ASN][1000 genomes]
rs10792403	0.97[ASN][1000 genomes]
rs10792404	0.97[ASN][1000 genomes]
rs10792406	0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10897380	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10897381	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10897382	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10897383	0.82[ASW][hapmap];0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10897384	0.82[ASW][hapmap];0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10897387	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10897390	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10897392	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10897396	0.82[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10897397	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10897407	0.95[CHB][hapmap];0.91[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap]
rs1122524	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11231391	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11231392	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11231394	0.97[ASN][1000 genomes]
rs11231395	0.96[ASN][1000 genomes]
rs11231396	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11231397	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11231403	0.97[ASN][1000 genomes]
rs11231406	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11231409	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231410	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231411	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231412	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231413	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231414	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231417	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11231418	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11231419	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11494212	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1152244	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1152245	0.87[ASN][1000 genomes]
rs1152246	0.87[ASN][1000 genomes]
rs11524468	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11524903	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11537206	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11559570	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1193642	1.00[ASN][1000 genomes]
rs1193645	1.00[ASN][1000 genomes]
rs1193646	1.00[ASN][1000 genomes]
rs1193718	0.88[ASN][1000 genomes]
rs1193726	0.95[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1193729	0.86[ASN][1000 genomes]
rs1193733	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1193772	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1193774	0.97[ASN][1000 genomes]
rs1193775	0.97[ASN][1000 genomes]
rs1193789	0.87[ASN][1000 genomes]
rs1193856	0.96[ASN][1000 genomes]
rs1193891	0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.97[ASN][1000 genomes]
rs1193892	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1193893	1.00[ASN][1000 genomes]
rs1193894	1.00[ASN][1000 genomes]
rs1193896	0.99[ASN][1000 genomes]
rs1193897	0.97[ASN][1000 genomes]
rs1193904	0.87[ASN][1000 genomes]
rs1193905	0.87[ASN][1000 genomes]
rs1201559	0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1205166	0.87[ASN][1000 genomes]
rs1205186	0.87[ASN][1000 genomes]
rs1211246	0.97[ASN][1000 genomes]
rs1211550	0.98[ASN][1000 genomes]
rs12224010	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12225186	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12416737	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417255	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417508	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12418081	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574223	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574967	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12576556	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12577849	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12785663	0.81[ASN][1000 genomes]
rs1300795	1.00[ASN][1000 genomes]
rs1300796	0.99[ASN][1000 genomes]
rs1300798	0.95[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1308010	0.99[ASN][1000 genomes]
rs1404608	0.95[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1525064	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1525071	0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1608760	0.87[ASN][1000 genomes]
rs1723213	0.88[ASN][1000 genomes]
rs1723219	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1783634	0.88[ASN][1000 genomes]
rs1783652	0.99[ASN][1000 genomes]
rs1783654	1.00[ASN][1000 genomes]
rs1789327	0.86[ASN][1000 genomes]
rs1789334	0.88[ASN][1000 genomes]
rs1790218	0.95[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1830026	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1852067	0.99[ASN][1000 genomes]
rs1939739	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1944086	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1944091	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944092	0.84[ASN][1000 genomes]
rs1997038	0.99[ASN][1000 genomes]
rs2155316	0.97[ASN][1000 genomes]
rs2186719	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2186721	0.97[ASN][1000 genomes]
rs2222591	0.97[ASN][1000 genomes]
rs2226866	0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2317089	0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2317090	0.97[ASN][1000 genomes]
rs2317093	0.97[ASN][1000 genomes]
rs2510590	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2510591	0.84[ASN][1000 genomes]
rs3891629	0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3915142	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3937020	0.87[ASN][1000 genomes]
rs4000269	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4060975	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4258381	0.99[ASN][1000 genomes]
rs4315076	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4337047	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4344494	0.99[ASN][1000 genomes]
rs4445638	0.95[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs474096	0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[ASN][1000 genomes]
rs474191	0.88[ASN][1000 genomes]
rs474815	0.84[ASN][1000 genomes]
rs474874	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs483012	0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[ASN][1000 genomes]
rs486460	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs494608	0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.90[MEX][hapmap]
rs4963252	0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4963380	0.91[ASN][1000 genomes]
rs4963381	0.91[ASN][1000 genomes]
rs4963385	0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.97[ASN][1000 genomes]
rs505653	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs513338	0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[ASN][1000 genomes]
rs515213	0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[ASN][1000 genomes]
rs516536	0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap]
rs524724	0.88[ASN][1000 genomes]
rs527027	0.87[ASN][1000 genomes]
rs527869	0.87[ASN][1000 genomes]
rs532085	0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs534799	0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[ASN][1000 genomes]
rs540141	0.87[ASN][1000 genomes]
rs543429	0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.87[ASN][1000 genomes]
rs548885	0.88[ASN][1000 genomes]
rs549144	0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.85[ASN][1000 genomes]
rs554430	0.87[ASN][1000 genomes]
rs556730	0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap]
rs557658	0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[ASN][1000 genomes]
rs557879	0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[ASN][1000 genomes]
rs55963399	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56030503	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs565787	0.88[ASN][1000 genomes]
rs572017	0.88[ASN][1000 genomes]
rs575009	0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.90[MEX][hapmap];0.88[ASN][1000 genomes]
rs576641	0.88[ASN][1000 genomes]
rs58347848	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58673340	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59019924	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59626188	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60090619	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60477987	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61928110	0.86[ASN][1000 genomes]
rs61928158	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591771	0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6591772	0.89[ASN][1000 genomes]
rs6591778	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7115707	0.97[ASN][1000 genomes]
rs7126435	0.82[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7130728	0.88[ASN][1000 genomes]
rs722508	0.95[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap]
rs7925045	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7925760	0.96[ASN][1000 genomes]
rs7928993	0.91[ASN][1000 genomes]
rs7929092	0.86[ASN][1000 genomes]
rs7932800	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7938140	0.97[ASN][1000 genomes]
rs7938146	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938863	0.97[ASN][1000 genomes]
rs7949840	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045308	chr11:62803635-63109338	Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv541059	chr11:62803635-63109338	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv555177	chr11:62847518-63110569	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049725	chr11:62848172-63057827	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv541060	chr11:62848172-63057827	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1047571	chr11:62848172-63109338	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv430397	chr11:62852616-63072310	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv897627	chr11:62984868-63119486	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs10897399	MS4A12	cis	cerebellum	SCAN
rs10897399	DNAJC4	cis	parietal	SCAN
rs10897399	RBM4B	cis	parietal	SCAN
rs10897399	VWCE	cis	cerebellum	SCAN
rs10897399	ACTN3	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63004200-63008800	Weak transcription	Esophagus	oesophagus
2	chr11:63004600-63009000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr11:63004600-63009000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr11:63006400-63009000	Enhancers	Fetal Intestine Large	intestine
5	chr11:63007200-63008800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:63008200-63009000	Enhancers	Adipose Nuclei	Adipose
7	chr11:63008200-63009000	Enhancers	Pancreas	Pancrea
8	chr11:63008200-63009400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:63008200-63012800	Enhancers	Thymus	Thymus
10	chr11:63008400-63008800	Enhancers	Liver	Liver
11	chr11:63008400-63008800	Flanking Active TSS	HepG2	liver
12	chr11:63008400-63009000	Enhancers	Fetal Intestine Small	intestine
13	chr11:63008600-63010600	Enhancers	Primary T cells from cord blood	blood
14	chr11:63008600-63011400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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