Variant report

Variant	rs2226866
Chromosome Location	chr11:62933774-62933775
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 149 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs10750995	0.87[ASN][1000 genomes]
rs10792403	0.87[ASN][1000 genomes]
rs10792404	0.87[ASN][1000 genomes]
rs10792406	0.91[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs10897380	0.86[ASN][1000 genomes]
rs10897381	0.91[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs10897382	0.87[ASN][1000 genomes]
rs10897383	0.91[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs10897384	0.91[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs10897390	0.86[ASN][1000 genomes]
rs10897392	0.86[ASN][1000 genomes]
rs10897396	0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs10897397	0.82[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs10897399	0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1122524	0.88[ASN][1000 genomes]
rs11231391	0.87[ASN][1000 genomes]
rs11231392	0.87[ASN][1000 genomes]
rs11231394	0.87[ASN][1000 genomes]
rs11231395	0.86[ASN][1000 genomes]
rs11231396	0.87[ASN][1000 genomes]
rs11231397	0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs11231403	0.87[ASN][1000 genomes]
rs11231409	0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs11231410	0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs11231411	0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs11231412	0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs11231413	0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs11231414	0.84[ASN][1000 genomes]
rs11231417	0.85[ASN][1000 genomes]
rs11231418	0.85[ASN][1000 genomes]
rs11231419	0.85[ASN][1000 genomes]
rs11494212	0.81[ASN][1000 genomes]
rs1152244	0.90[JPT][hapmap]
rs11524468	0.86[ASN][1000 genomes]
rs11524903	0.84[ASN][1000 genomes]
rs11537206	0.88[ASN][1000 genomes]
rs1193642	0.84[ASN][1000 genomes]
rs1193645	0.84[ASN][1000 genomes]
rs1193646	0.84[ASN][1000 genomes]
rs1193726	0.82[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs1193733	0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1193772	0.82[ASN][1000 genomes]
rs1193774	0.82[ASN][1000 genomes]
rs1193775	0.82[ASN][1000 genomes]
rs1193856	0.81[ASN][1000 genomes]
rs1193891	0.82[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs1193892	0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1193893	0.84[ASN][1000 genomes]
rs1193894	0.84[ASN][1000 genomes]
rs1193896	0.84[ASN][1000 genomes]
rs1193897	0.82[ASN][1000 genomes]
rs1201559	0.82[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap]
rs1211246	0.82[ASN][1000 genomes]
rs1211550	0.85[ASN][1000 genomes]
rs12224010	0.81[ASN][1000 genomes]
rs12225186	0.81[ASN][1000 genomes]
rs12416737	0.84[ASN][1000 genomes]
rs12417255	0.84[ASN][1000 genomes]
rs12417508	0.86[ASN][1000 genomes]
rs12418081	0.84[ASN][1000 genomes]
rs12574223	0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs12574967	0.84[ASN][1000 genomes]
rs12576556	0.84[ASN][1000 genomes]
rs12577849	0.84[ASN][1000 genomes]
rs12785663	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1300795	0.84[ASN][1000 genomes]
rs1300796	0.86[ASN][1000 genomes]
rs1300798	0.91[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1308010	0.86[ASN][1000 genomes]
rs1404608	0.82[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs1525064	0.91[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1525071	0.91[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs1723219	0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1783652	0.85[ASN][1000 genomes]
rs1783654	0.84[ASN][1000 genomes]
rs1790218	0.82[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs1830026	0.86[ASN][1000 genomes]
rs1852067	0.86[ASN][1000 genomes]
rs1939739	0.87[ASN][1000 genomes]
rs1944086	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs1944091	0.84[ASN][1000 genomes]
rs1997038	0.86[ASN][1000 genomes]
rs2155316	0.87[ASN][1000 genomes]
rs2186719	0.87[ASN][1000 genomes]
rs2186721	0.87[ASN][1000 genomes]
rs2222591	0.84[ASN][1000 genomes]
rs2317089	0.91[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs2317090	0.87[ASN][1000 genomes]
rs2317093	0.87[ASN][1000 genomes]
rs2510590	0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2510591	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3891629	0.90[CHB][hapmap];0.86[CHD][hapmap];0.87[ASN][1000 genomes]
rs3915142	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs4000269	0.85[ASN][1000 genomes]
rs4258381	0.86[ASN][1000 genomes]
rs4315076	0.84[ASN][1000 genomes]
rs4337047	0.87[ASN][1000 genomes]
rs4344494	0.86[ASN][1000 genomes]
rs4445638	0.82[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs474096	0.82[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs474874	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs483012	0.82[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap]
rs486460	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs4963252	0.91[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs4963380	0.81[ASN][1000 genomes]
rs4963381	0.81[ASN][1000 genomes]
rs4963385	0.82[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs505653	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs513338	0.82[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs515213	0.82[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs532085	0.82[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs534799	0.82[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs543429	0.82[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap]
rs549144	0.82[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs557658	0.82[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs557879	0.82[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs55963399	0.83[ASN][1000 genomes]
rs575009	0.82[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap]
rs58673340	0.84[ASN][1000 genomes]
rs59019924	0.82[ASN][1000 genomes]
rs59626188	0.84[ASN][1000 genomes]
rs60090619	0.84[ASN][1000 genomes]
rs60477987	0.84[ASN][1000 genomes]
rs61928110	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61928158	0.84[ASN][1000 genomes]
rs6591771	0.91[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs6591778	0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs7115707	0.87[ASN][1000 genomes]
rs7126435	0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs722508	0.82[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap]
rs7925045	0.84[ASN][1000 genomes]
rs7925760	0.83[ASN][1000 genomes]
rs7928993	0.81[ASN][1000 genomes]
rs7929092	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7932800	0.85[ASN][1000 genomes]
rs7938140	0.82[ASN][1000 genomes]
rs7938146	0.84[ASN][1000 genomes]
rs7938863	0.87[ASN][1000 genomes]
rs7949840	0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34011	chr11:62652779-62993702	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1045308	chr11:62803635-63109338	Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv541059	chr11:62803635-63109338	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv897626	chr11:62839667-62967791	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv555177	chr11:62847518-63110569	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1049725	chr11:62848172-63057827	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv541060	chr11:62848172-63057827	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1047571	chr11:62848172-63109338	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv430397	chr11:62852616-63072310	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	esv2753282	chr11:62883681-62986146	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2226866	SNORD30	cis	cerebellum	SCAN
rs2226866	DKFZp761E198	cis	parietal	SCAN
rs2226866	RBM4B	cis	parietal	SCAN
rs2226866	NUDT22	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:62929000-62937200	Strong transcription	Liver	Liver
2	chr11:62932800-62933800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:62933400-62934600	Enhancers	Pancreas	Pancrea
4	chr11:62933600-62933800	Flanking Active TSS	HUVEC	blood vessel

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