Variant report

Variant	rs10897456
Chromosome Location	chr11:63629535-63629536
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63607750..63611534-chr11:63627673..63634127,5	MCF-7	breast:
2	chr11:63623116..63625198-chr11:63627070..63629922,2	MCF-7	breast:
3	chr11:63618116..63619844-chr11:63626864..63629830,2	MCF-7	breast:
4	chr11:63628759..63635867-chr11:63636847..63643133,8	K562	blood:
5	chr11:63628257..63633019-chr11:63633939..63639801,7	MCF-7	breast:
6	chr11:63606657..63608807-chr11:63627525..63629804,2	MCF-7	breast:
7	chr11:63626669..63629006-chr11:63629187..63632066,2	MCF-7	breast:
8	chr11:63615756..63618700-chr11:63628193..63630104,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000072518	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10751001	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10897459	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11231623	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11231628	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11231637	0.87[ASN][1000 genomes]
rs11231643	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12418000	0.92[ASN][1000 genomes]
rs12786124	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12792726	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12793201	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12794404	0.92[ASN][1000 genomes]
rs1486936	0.87[ASN][1000 genomes]
rs224173	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2318126	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3019785	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3850943	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4143327	0.85[ASN][1000 genomes]
rs449047	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs454474	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4963433	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4980530	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61886128	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7105288	0.87[ASN][1000 genomes]
rs7121067	0.87[ASN][1000 genomes]
rs7928919	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939416	0.86[EUR][1000 genomes]
rs928948	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv1839119	chr11:63615554-63680052	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63609600-63629600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:63610200-63633200	Weak transcription	Fetal Brain Male	brain
3	chr11:63611800-63629800	Weak transcription	Aorta	Aorta
4	chr11:63613200-63632400	Weak transcription	Fetal Brain Female	brain
5	chr11:63613200-63633000	Weak transcription	HSMM	muscle
6	chr11:63615800-63633200	Weak transcription	HMEC	breast
7	chr11:63615800-63634800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr11:63615800-63636000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:63615800-63636000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:63615800-63636000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:63617000-63629600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:63619000-63632600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:63619200-63638000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:63619400-63629600	Weak transcription	Liver	Liver
15	chr11:63619400-63629600	Weak transcription	Esophagus	oesophagus
16	chr11:63619400-63639400	Weak transcription	Ovary	ovary
17	chr11:63619600-63629600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr11:63619600-63629800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr11:63619600-63630200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:63619600-63633000	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:63619600-63633000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr11:63619600-63634000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr11:63619600-63636000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr11:63619600-63636000	Weak transcription	HSMMtube	muscle
25	chr11:63619600-63639200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:63621200-63629800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:63622800-63633000	Weak transcription	Fetal Lung	lung
28	chr11:63623000-63629600	Weak transcription	Brain Germinal Matrix	brain
29	chr11:63623400-63630400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr11:63623800-63629600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:63623800-63629800	Weak transcription	NHDF-Ad	bronchial
32	chr11:63623800-63630400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr11:63624200-63629600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr11:63625600-63630000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:63625800-63629800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr11:63625800-63629800	Weak transcription	Small Intestine	intestine
37	chr11:63626200-63629600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:63626400-63629600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:63626400-63629600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr11:63626400-63629800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr11:63626400-63629800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr11:63626400-63629800	Weak transcription	NHLF	lung
43	chr11:63626400-63630400	Weak transcription	Osteobl	bone
44	chr11:63626400-63633000	Weak transcription	Fetal Heart	heart
45	chr11:63626400-63637800	Weak transcription	NH-A	brain
46	chr11:63626600-63629600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:63626600-63629600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr11:63626600-63629600	Weak transcription	GM12878-XiMat	blood
49	chr11:63626600-63629800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr11:63626600-63629800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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