Variant report

Variant	rs12794404
Chromosome Location	chr11:63696465-63696466
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63684393..63687142-chr11:63694505..63697454,4	MCF-7	breast:
2	chr11:63684384..63686159-chr11:63693977..63696781,2	MCF-7	breast:
3	chr11:63687502..63689214-chr11:63695496..63697632,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10897456	0.92[ASN][1000 genomes]
rs10897459	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10897465	0.82[EUR][1000 genomes]
rs10897467	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10897469	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10897470	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11231623	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11231628	0.86[EUR][1000 genomes]
rs11231637	0.90[ASN][1000 genomes]
rs11231643	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231646	0.82[EUR][1000 genomes]
rs11231655	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11231662	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11231663	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11231664	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11231670	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11231671	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11600062	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11605797	0.81[AMR][1000 genomes]
rs12417157	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12417507	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12418000	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421757	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12786124	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12792726	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12793201	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797540	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12800703	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1486936	0.90[ASN][1000 genomes]
rs2129467	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs224173	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2318126	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3019785	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34134698	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34595065	0.80[AMR][1000 genomes]
rs3740637	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4143327	0.88[ASN][1000 genomes]
rs449047	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs454474	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs479975	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs492357	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4980499	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4980500	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4980501	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4980509	0.80[EUR][1000 genomes]
rs4980517	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4980530	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs501278	0.83[AMR][1000 genomes]
rs504060	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs509701	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs579669	0.80[EUR][1000 genomes]
rs581355	0.83[AMR][1000 genomes]
rs61886128	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7105288	0.90[ASN][1000 genomes]
rs7112348	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7121067	0.90[ASN][1000 genomes]
rs7926608	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7928919	0.92[ASN][1000 genomes]
rs7936614	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs928948	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv468590	chr11:63639881-63783352	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv555181	chr11:63639881-63783352	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv897629	chr11:63664882-63866959	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv897630	chr11:63664882-63924446	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
9	nsv897634	chr11:63670787-63698538	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	14 gene(s)	inside rSNPs	diseases
10	nsv897639	chr11:63691049-63844683	Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
11	nsv512232	chr11:63696218-63701725	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63691200-63698600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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