Variant report
Variant | rs11231662 |
---|---|
Chromosome Location | chr11:63738642-63738643 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:24)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:24 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | GATA3 | chr11:63738423-63738720 | T-47D | breast: | n/a | n/a |
2 | POLR2A | chr11:63738042-63739518 | K562 | blood: | n/a | n/a |
3 | SPI1 | chr11:63738529-63738745 | K562 | blood: | n/a | n/a |
4 | MYC | chr11:63738379-63738686 | NB4 | blood: | n/a | chr11:63738467-63738477 |
5 | SPI1 | chr11:63738355-63738893 | HL-60 | blood: | n/a | n/a |
6 | MAX | chr11:63738469-63738675 | HepG2 | liver: | n/a | n/a |
7 | E2F6 | chr11:63738381-63738702 | K562 | blood: | n/a | n/a |
8 | POLR2A | chr11:63738551-63739425 | MCF10A-Er-Src | breast: | n/a | n/a |
9 | MYC | chr11:63738413-63738655 | K562 | blood: | n/a | chr11:63738467-63738477 |
10 | EP300 | chr11:63738490-63738703 | K562 | blood: | n/a | n/a |
11 | JUND | chr11:63738511-63738672 | K562 | blood: | n/a | n/a |
12 | CBX3 | chr11:63738393-63738809 | K562 | blood: | n/a | n/a |
13 | MAX | chr11:63738404-63738744 | NB4 | blood: | n/a | chr11:63738467-63738477 |
14 | ELF1 | chr11:63738386-63738795 | K562 | blood: | n/a | n/a |
15 | MAX | chr11:63738248-63738735 | K562 | blood: | n/a | chr11:63738467-63738477 |
16 | BHLHE40 | chr11:63738423-63738788 | K562 | blood: | n/a | n/a |
17 | POLR2A | chr11:63738334-63738717 | K562 | blood: | n/a | n/a |
18 | TEAD4 | chr11:63738296-63738805 | K562 | blood: | n/a | n/a |
19 | POLR2A | chr11:63738353-63738842 | Hela-S3 | cervix: | n/a | n/a |
20 | CEBPB | chr11:63738483-63738758 | K562 | blood: | n/a | n/a |
21 | USF1 | chr11:63738397-63738761 | K562 | blood: | n/a | n/a |
22 | E2F6 | chr11:63738349-63738755 | K562 | blood: | n/a | n/a |
23 | MAX | chr11:63738374-63738674 | K562 | blood: | n/a | chr11:63738467-63738477 |
24 | MAX | chr11:63738414-63738700 | K562 | blood: | n/a | chr11:63738467-63738477 |
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Variant related genes | Relation type |
---|---|
ENSG00000256100 | TF binding region |
COX8A | TF binding region |
rs_ID | r2[population] |
---|---|
rs10751004 | 0.83[EUR][1000 genomes] |
rs10792424 | 0.83[EUR][1000 genomes] |
rs10897459 | 0.92[CEU][hapmap];0.81[GIH][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap] |
rs10897465 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs10897466 | 0.85[TSI][hapmap] |
rs10897467 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10897468 | 0.81[EUR][1000 genomes] |
rs10897469 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10897470 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs11231603 | 1.00[YRI][hapmap] |
rs11231628 | 0.92[CEU][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap] |
rs11231643 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs11231646 | 0.85[CEU][hapmap];0.86[GIH][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes] |
rs11231655 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs11231663 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11231664 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs11231670 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs11231671 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[GIH][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11600062 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs11601228 | 0.84[EUR][1000 genomes] |
rs11605797 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs12417157 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12417507 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs12418000 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs12421757 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs12786124 | 0.92[CEU][hapmap];0.90[GIH][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes] |
rs12790749 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs12793201 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs12794404 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs12797540 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12798491 | 0.81[MEX][hapmap];0.82[TSI][hapmap] |
rs12800703 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs12808604 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs1386346 | 0.83[TSI][hapmap] |
rs1684950 | 0.83[EUR][1000 genomes] |
rs1783964 | 0.81[EUR][1000 genomes] |
rs2129467 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2186572 | 1.00[YRI][hapmap] |
rs224173 | 0.85[AMR][1000 genomes] |
rs2318110 | 0.81[EUR][1000 genomes] |
rs2318126 | 0.92[CEU][hapmap];0.81[GIH][hapmap];0.83[TSI][hapmap] |
rs3019782 | 0.81[EUR][1000 genomes] |
rs3019785 | 0.85[AMR][1000 genomes] |
rs320121 | 0.82[EUR][1000 genomes] |
rs320156 | 0.88[MEX][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes] |
rs34134698 | 0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs34595065 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs3740636 | 0.81[MEX][hapmap];0.80[TSI][hapmap] |
rs3740637 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs4426138 | 0.80[EUR][1000 genomes] |
rs449047 | 0.92[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap] |
rs454474 | 0.92[CEU][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap] |
rs479975 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs481835 | 0.81[MEX][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes] |
rs483340 | 0.88[MEX][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes] |
rs487540 | 0.83[EUR][1000 genomes] |
rs488082 | 0.83[EUR][1000 genomes] |
rs492357 | 0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4980499 | 0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4980500 | 0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4980501 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4980509 | 0.83[EUR][1000 genomes] |
rs4980512 | 0.81[MEX][hapmap];0.80[TSI][hapmap] |
rs4980516 | 0.83[EUR][1000 genomes] |
rs4980517 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4980530 | 0.92[CEU][hapmap];0.81[GIH][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap] |
rs499118 | 0.83[EUR][1000 genomes] |
rs500493 | 0.81[TSI][hapmap] |
rs501278 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs502858 | 0.83[EUR][1000 genomes] |
rs504060 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs509701 | 0.82[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs523586 | 0.81[AMR][1000 genomes] |
rs529915 | 0.81[EUR][1000 genomes] |
rs539432 | 0.85[EUR][1000 genomes] |
rs553724 | 0.82[EUR][1000 genomes] |
rs562865 | 0.83[EUR][1000 genomes] |
rs567386 | 0.88[MEX][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes] |
rs578295 | 0.83[EUR][1000 genomes] |
rs579669 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs581355 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs646384 | 1.00[YRI][hapmap] |
rs6591830 | 0.80[EUR][1000 genomes] |
rs660070 | 1.00[YRI][hapmap] |
rs67136175 | 0.91[EUR][1000 genomes] |
rs709594 | 0.82[EUR][1000 genomes] |
rs7112348 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs728919 | 0.81[MEX][hapmap];0.80[TSI][hapmap] |
rs7926608 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7928990 | 0.81[EUR][1000 genomes] |
rs7936614 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7938498 | 0.81[MEX][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes] |
rs7942318 | 0.83[EUR][1000 genomes] |
rs928948 | 0.92[CEU][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap] |
rs947939 | 1.00[YRI][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1051171 | chr11:62987064-63835715 | Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 100 gene(s) | inside rSNPs | diseases |
2 | nsv468590 | chr11:63639881-63783352 | Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
3 | nsv555181 | chr11:63639881-63783352 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
4 | nsv897629 | chr11:63664882-63866959 | Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
5 | nsv897630 | chr11:63664882-63924446 | Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 46 gene(s) | inside rSNPs | diseases |
6 | nsv897631 | chr11:63664882-64129722 | Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 254 gene(s) | inside rSNPs | diseases |
7 | nsv897639 | chr11:63691049-63844683 | Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
8 | esv1849906 | chr11:63719273-63880383 | Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
9 | nsv1042075 | chr11:63732454-63813164 | Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
10 | esv29993 | chr11:63738642-63864211 | Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
SNP | Gene | Cis/trans | Tissue | Source |
---|---|---|---|---|
rs11231662 | MS4A6E | cis | cerebellum | SCAN |
rs11231662 | HNRNPUL2 | cis | parietal | SCAN |
rs11231662 | SLC22A12 | cis | parietal | SCAN |
rs11231662 | FTH1 | cis | parietal | SCAN |
rs11231662 | SLC22A24 | cis | parietal | SCAN |
rs11231662 | RBM4B | cis | cerebellum | SCAN |
rs11231662 | C11orf95 | cis | cerebellum | SCAN |
rs11231662 | GANAB | cis | parietal | SCAN |
rs11231662 | HRASLS3 | cis | multi-tissue | Pritchard |
rs11231662 | MS4A12 | cis | parietal | SCAN |
rs11231662 | MS4A7 | cis | cerebellum | SCAN |
rs11231662 | SCYL1 | cis | cerebellum | SCAN |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:63729600-63741600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
2 | chr11:63736600-63739200 | Enhancers | K562 | blood |
3 | chr11:63737400-63739400 | Enhancers | HepG2 | liver |
4 | chr11:63737600-63739600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
5 | chr11:63738000-63739000 | Enhancers | Primary monocytes fromperipheralblood | blood |
6 | chr11:63738200-63739000 | Enhancers | Primary hematopoietic stem cells short term culture | blood |
7 | chr11:63738400-63741600 | Weak transcription | Primary T helper memory cells from peripheral blood 2 | blood |
8 | chr11:63738600-63741400 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
9 | chr11:63738600-63741600 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
10 | chr11:63738600-63742000 | Weak transcription | Spleen | Spleen |