Variant report

Variant	rs539432
Chromosome Location	chr11:63769144-63769145
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:63763487-63769382	K562	blood:	n/a	n/a
2	POLR2A	chr11:63769141-63769534	HUVEC	blood vessel:	n/a	n/a
3	POLR2A	chr11:63769055-63769706	HepG2	liver:	n/a	n/a
4	POLR2A	chr11:63769038-63770136	K562	blood:	n/a	n/a
5	POLR2A	chr11:63769084-63769975	PANC-1	pancreas:	n/a	n/a
6	POLR2A	chr11:63769001-63769495	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr11:63769105-63769403	K562	blood:	n/a	n/a
8	POLR2A	chr11:63768896-63769660	MCF-7	breast:	n/a	n/a
9	POLR2A	chr11:63768190-63771259	PFSK-1	brain:	n/a	n/a
10	TCF7L2	chr11:63768840-63769325	PANC-1	pancreas:	n/a	n/a
11	BCL3	chr11:63768826-63769206	A549	lung:	n/a	n/a
12	POLR2A	chr11:63768278-63769607	K562	blood:	n/a	n/a
13	POLR2A	chr11:63768300-63769440	Hela-S3	cervix:	n/a	n/a
14	TCF7L2	chr11:63768836-63769360	Hela-S3	cervix:	n/a	n/a
15	POLR2A	chr11:63768924-63769920	PANC-1	pancreas:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63765241..63769899-chr11:63951624..63954334,5	MCF-7	breast:

Variant related genes	Relation type
MACROD1	TF binding region
ENSG00000168439	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10751004	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10792424	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10897464	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10897466	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs10897467	0.83[EUR][1000 genomes]
rs10897468	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10897469	0.82[EUR][1000 genomes]
rs10897470	0.85[EUR][1000 genomes]
rs10897471	0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs11231646	0.85[CEU][hapmap]
rs11231653	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11231662	0.85[EUR][1000 genomes]
rs11231663	0.85[EUR][1000 genomes]
rs11231664	0.85[EUR][1000 genomes]
rs11231670	0.85[EUR][1000 genomes]
rs11231671	0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11600062	0.85[EUR][1000 genomes]
rs11601228	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11605797	0.81[EUR][1000 genomes]
rs11607028	0.89[EUR][1000 genomes]
rs12417157	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12790749	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12798491	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs12800703	0.85[EUR][1000 genomes]
rs12808604	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1386346	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1684950	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1783964	0.95[EUR][1000 genomes]
rs2129467	0.85[EUR][1000 genomes]
rs2508584	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3019782	0.95[EUR][1000 genomes]
rs320121	0.93[EUR][1000 genomes]
rs320156	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34134698	0.83[EUR][1000 genomes]
rs34595065	0.81[EUR][1000 genomes]
rs35492216	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3740636	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4426138	0.94[EUR][1000 genomes]
rs479975	0.84[EUR][1000 genomes]
rs481835	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs483340	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs487540	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs488082	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs492357	0.85[EUR][1000 genomes]
rs4980501	0.82[EUR][1000 genomes]
rs4980512	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4980516	0.96[EUR][1000 genomes]
rs4980517	0.84[EUR][1000 genomes]
rs499118	0.96[EUR][1000 genomes]
rs500493	0.85[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs502858	0.96[EUR][1000 genomes]
rs504060	0.84[EUR][1000 genomes]
rs504314	0.86[EUR][1000 genomes]
rs509701	0.82[EUR][1000 genomes]
rs528927	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs529915	0.95[EUR][1000 genomes]
rs553724	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs562865	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs567386	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs578295	0.96[EUR][1000 genomes]
rs579669	0.82[EUR][1000 genomes]
rs6591830	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs709594	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs728919	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs744864	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs7926608	0.83[EUR][1000 genomes]
rs7928990	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7936614	0.83[EUR][1000 genomes]
rs7938498	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7939571	0.80[AFR][1000 genomes]
rs7942318	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7951529	0.89[EUR][1000 genomes]
rs9943682	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468590	chr11:63639881-63783352	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv555181	chr11:63639881-63783352	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv897629	chr11:63664882-63866959	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv897630	chr11:63664882-63924446	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
7	nsv897639	chr11:63691049-63844683	Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
8	esv1849906	chr11:63719273-63880383	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
9	nsv1042075	chr11:63732454-63813164	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	esv29993	chr11:63738642-63864211	Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
11	nsv897640	chr11:63744152-63835611	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv897641	chr11:63744152-63844683	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
13	nsv897642	chr11:63744152-63866959	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
14	esv1802079	chr11:63746066-64151373	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	247 gene(s)	inside rSNPs	diseases
15	nsv897643	chr11:63754986-63844683	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
16	nsv897644	chr11:63754986-63849330	Bivalent Enhancer Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
17	nsv897645	chr11:63754986-63859751	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
18	nsv897646	chr11:63754986-64150370	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
19	nsv897647	chr11:63755961-63835611	Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
20	nsv897648	chr11:63761169-63774370	Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
21	nsv897649	chr11:63761169-63844683	Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
22	nsv897650	chr11:63761169-63849330	Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
23	nsv897651	chr11:63761169-63863405	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
24	nsv897652	chr11:63761169-63866959	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
25	nsv897653	chr11:63761169-63875456	Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
26	esv3340630	chr11:63766801-63769349	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63755200-63775200	Weak transcription	Psoas Muscle	Psoas
2	chr11:63756200-63769200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:63759200-63774800	Weak transcription	HSMMtube	muscle
4	chr11:63760600-63771800	Strong transcription	Dnd41	blood
5	chr11:63762600-63777800	Weak transcription	Hela-S3	cervix
6	chr11:63764800-63772000	Weak transcription	HepG2	liver
7	chr11:63765000-63769400	Weak transcription	HSMM	muscle
8	chr11:63765000-63774200	Weak transcription	Brain Angular Gyrus	brain
9	chr11:63766400-63770200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr11:63766400-63770400	Enhancers	Fetal Heart	heart
11	chr11:63766400-63770600	Enhancers	Placenta	Placenta
12	chr11:63766800-63770400	Enhancers	Lung	lung
13	chr11:63767000-63774400	Weak transcription	K562	blood
14	chr11:63767200-63769800	Enhancers	Liver	Liver
15	chr11:63767200-63769800	Enhancers	Brain Anterior Caudate	brain
16	chr11:63767200-63770200	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr11:63767800-63769800	Enhancers	NHLF	lung
18	chr11:63767800-63770200	Enhancers	Primary hematopoietic stem cells	blood
19	chr11:63767800-63770200	Enhancers	Fetal Brain Male	brain
20	chr11:63767800-63773400	Enhancers	Spleen	Spleen
21	chr11:63768400-63769200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:63768400-63769200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
23	chr11:63768400-63769200	Bivalent Enhancer	NHEK	skin
24	chr11:63768400-63769400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:63768400-63769800	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr11:63768400-63769800	Enhancers	Left Ventricle	heart
27	chr11:63768400-63770000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:63768400-63770000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:63768400-63770000	Bivalent Enhancer	Fetal Thymus	thymus
30	chr11:63768400-63770200	Enhancers	HUVEC	blood vessel
31	chr11:63768400-63770600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr11:63768400-63773800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr11:63768400-63774600	Weak transcription	Gastric	stomach
34	chr11:63768600-63769200	Bivalent Enhancer	Fetal Intestine Small	intestine
35	chr11:63768600-63769400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:63768600-63769400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
37	chr11:63768600-63769400	Weak transcription	Osteobl	bone
38	chr11:63768600-63769600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
39	chr11:63768600-63769600	Weak transcription	Fetal Intestine Large	intestine
40	chr11:63768600-63769600	Enhancers	Pancreas	Pancrea
41	chr11:63768600-63769800	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
42	chr11:63768600-63770000	Bivalent Enhancer	Colonic Mucosa	Colon
43	chr11:63768600-63770000	Enhancers	Colon Smooth Muscle	Colon
44	chr11:63768600-63770200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
45	chr11:63768600-63770200	Enhancers	Duodenum Mucosa	Duodenum
46	chr11:63768600-63770200	Enhancers	Ovary	ovary
47	chr11:63768600-63770200	Enhancers	Right Ventricle	heart
48	chr11:63768600-63770200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
49	chr11:63768600-63770400	Bivalent Enhancer	Fetal Stomach	stomach
50	chr11:63768600-63770400	Enhancers	Stomach Smooth Muscle	stomach

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