Variant report

Variant	rs11231670
Chromosome Location	chr11:63759890-63759891
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63684070..63686718-chr11:63758305..63761285,3	MCF-7	breast:
2	chr11:63751963..63753694-chr11:63759818..63761321,2	K562	blood:
3	chr11:63757630..63760434-chr11:63765175..63767799,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133315	Chromatin interaction
ENSG00000167770	Chromatin interaction
ENSG00000167771	Chromatin interaction

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10751004	0.83[EUR][1000 genomes]
rs10792424	0.83[EUR][1000 genomes]
rs10897459	0.92[CEU][hapmap]
rs10897465	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10897467	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10897468	0.81[EUR][1000 genomes]
rs10897469	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10897470	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231603	1.00[YRI][hapmap]
rs11231628	0.92[CEU][hapmap]
rs11231643	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11231646	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs11231655	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11231662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11231663	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11231664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231671	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11600062	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11601228	0.84[EUR][1000 genomes]
rs11605797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417157	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12417507	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12418000	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12421757	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12786124	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs12790749	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12793201	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12794404	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12797540	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12800703	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12808604	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1684950	0.83[EUR][1000 genomes]
rs1783964	0.81[EUR][1000 genomes]
rs2129467	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2186572	1.00[YRI][hapmap]
rs224173	0.81[AMR][1000 genomes]
rs2318110	0.81[EUR][1000 genomes]
rs2318126	0.92[CEU][hapmap]
rs3019782	0.81[EUR][1000 genomes]
rs3019785	0.81[AMR][1000 genomes]
rs320121	0.82[EUR][1000 genomes]
rs320156	0.83[EUR][1000 genomes]
rs34134698	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34595065	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740637	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4426138	0.80[EUR][1000 genomes]
rs449047	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs454474	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs479975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs481835	0.83[EUR][1000 genomes]
rs483340	0.83[EUR][1000 genomes]
rs487540	0.83[EUR][1000 genomes]
rs488082	0.83[EUR][1000 genomes]
rs492357	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4980499	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4980500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4980501	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4980509	0.83[EUR][1000 genomes]
rs4980516	0.83[EUR][1000 genomes]
rs4980517	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4980530	0.92[CEU][hapmap]
rs499118	0.83[EUR][1000 genomes]
rs501278	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs502858	0.83[EUR][1000 genomes]
rs504060	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs509701	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs523586	0.84[AMR][1000 genomes]
rs529915	0.81[EUR][1000 genomes]
rs539432	0.85[EUR][1000 genomes]
rs553724	0.82[EUR][1000 genomes]
rs562865	0.83[EUR][1000 genomes]
rs567386	0.82[EUR][1000 genomes]
rs578295	0.83[EUR][1000 genomes]
rs579669	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs581355	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs646384	1.00[YRI][hapmap]
rs6591830	0.80[EUR][1000 genomes]
rs660070	1.00[YRI][hapmap]
rs67136175	0.91[EUR][1000 genomes]
rs709594	0.82[EUR][1000 genomes]
rs7112348	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7926608	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7928990	0.81[EUR][1000 genomes]
rs7936614	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7938498	0.81[EUR][1000 genomes]
rs7942318	0.83[EUR][1000 genomes]
rs928948	0.92[CEU][hapmap]
rs947939	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468590	chr11:63639881-63783352	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv555181	chr11:63639881-63783352	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv897629	chr11:63664882-63866959	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv897630	chr11:63664882-63924446	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
7	nsv897639	chr11:63691049-63844683	Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
8	esv1849906	chr11:63719273-63880383	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
9	nsv1042075	chr11:63732454-63813164	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	esv29993	chr11:63738642-63864211	Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
11	nsv897640	chr11:63744152-63835611	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv897641	chr11:63744152-63844683	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
13	nsv897642	chr11:63744152-63866959	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
14	esv1802079	chr11:63746066-64151373	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	247 gene(s)	inside rSNPs	diseases
15	nsv897643	chr11:63754986-63844683	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
16	nsv897644	chr11:63754986-63849330	Bivalent Enhancer Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
17	nsv897645	chr11:63754986-63859751	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
18	nsv897646	chr11:63754986-64150370	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
19	nsv897647	chr11:63755961-63835611	Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63754800-63767600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:63755000-63766600	Weak transcription	Right Atrium	heart
3	chr11:63755000-63769000	Weak transcription	Fetal Kidney	kidney
4	chr11:63755200-63761200	Weak transcription	HUVEC	blood vessel
5	chr11:63755200-63762000	Weak transcription	Small Intestine	intestine
6	chr11:63755200-63766600	Weak transcription	Stomach Mucosa	stomach
7	chr11:63755200-63775200	Weak transcription	Psoas Muscle	Psoas
8	chr11:63755400-63760400	Weak transcription	Brain Angular Gyrus	brain
9	chr11:63755400-63762400	Weak transcription	Brain Substantia Nigra	brain
10	chr11:63755400-63765400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:63755400-63765400	Strong transcription	Fetal Stomach	stomach
12	chr11:63755400-63765600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:63755400-63766200	Strong transcription	Fetal Muscle Leg	muscle
14	chr11:63755400-63766200	Strong transcription	Fetal Thymus	thymus
15	chr11:63755400-63766400	Strong transcription	NHLF	lung
16	chr11:63755400-63766600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:63755600-63764800	Weak transcription	Fetal Brain Male	brain
18	chr11:63755600-63765800	Strong transcription	NHEK	skin
19	chr11:63755600-63766000	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr11:63755600-63766400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:63755800-63760600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr11:63755800-63760800	Strong transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:63755800-63761000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:63755800-63761000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:63755800-63762200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:63755800-63764800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:63755800-63765000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:63755800-63766200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr11:63756000-63760000	Strong transcription	Spleen	Spleen
30	chr11:63756000-63760000	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr11:63756000-63760600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:63756000-63762000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:63756000-63762200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr11:63756000-63764400	Strong transcription	Thymus	Thymus
35	chr11:63756000-63764600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:63756000-63765400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr11:63756000-63765600	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr11:63756000-63765800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr11:63756000-63766000	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr11:63756000-63766000	Strong transcription	Fetal Brain Female	brain
41	chr11:63756000-63766000	Strong transcription	Stomach Smooth Muscle	stomach
42	chr11:63756000-63766400	Weak transcription	Fetal Heart	heart
43	chr11:63756200-63765600	Strong transcription	Fetal Muscle Trunk	muscle
44	chr11:63756200-63766200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr11:63756200-63766800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:63756200-63769200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:63756400-63760600	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr11:63756400-63761400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr11:63756400-63764200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr11:63756400-63764200	Strong transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links