Variant report

Variant	rs10898227
Chromosome Location	chr11:84053178-84053179
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10501559	1.00[EUR][1000 genomes]
rs10792755	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs10792756	1.00[CHB][hapmap]
rs10898226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1559854	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs3914464	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4547118	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs489716	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs4943892	1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap]
rs4943893	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4944487	1.00[EUR][1000 genomes]
rs567263	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs568789	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs61897669	0.94[ASN][1000 genomes]
rs6592177	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6592179	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs672796	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs7117729	1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7118287	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs7121832	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7128063	1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs7128524	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7942296	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7947614	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1038641	chr11:83996453-84334045	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541103	chr11:83996453-84334045	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1049696	chr11:84039547-84116297	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84052600-84054000	Enhancers	Brain Hippocampus Middle	brain

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