Variant report

Variant	rs7128063
Chromosome Location	chr11:84096804-84096805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10501559	0.80[CEU][hapmap]
rs10792755	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10792756	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs10898226	0.94[ASN][1000 genomes]
rs10898227	1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs10898232	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1559854	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs2016830	0.80[CEU][hapmap]
rs3906479	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs3914464	0.92[CHB][hapmap];0.86[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.81[LWK][hapmap];0.86[MKK][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4310638	0.80[CEU][hapmap];0.83[GIH][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs4547118	0.92[ASN][1000 genomes]
rs4636699	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs489716	0.92[CHB][hapmap];0.84[CHD][hapmap]
rs4943892	0.89[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs4943893	0.80[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs567263	0.92[CHB][hapmap];0.87[CHD][hapmap];0.83[JPT][hapmap]
rs568789	0.92[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap]
rs61897669	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6592176	0.80[CEU][hapmap];0.83[GIH][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap]
rs6592177	0.92[ASW][hapmap];0.86[CHD][hapmap];0.89[JPT][hapmap];0.81[LWK][hapmap];0.82[MEX][hapmap];0.89[ASN][1000 genomes]
rs6592179	0.94[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs672796	0.92[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap]
rs7108323	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7117729	1.00[CHB][hapmap];0.97[CHD][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs7118287	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7121832	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7124614	0.80[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7128524	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7928824	0.84[AMR][1000 genomes]
rs7942296	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap]
rs7947614	0.92[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1038641	chr11:83996453-84334045	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541103	chr11:83996453-84334045	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1049696	chr11:84039547-84116297	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv898031	chr11:84060342-84379671	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1047030	chr11:84067493-84187274	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1041755	chr11:84067493-84315623	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv541104	chr11:84067493-84315623	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv817504	chr11:84070883-84301151	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1052925	chr11:84092727-84274689	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7128063	TMEM126B	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84094200-84101000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:84096000-84097000	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links