Variant report

Variant	rs3906479
Chromosome Location	chr11:84055992-84055993
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10501559	0.80[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10792756	0.94[CEU][hapmap]
rs10898232	0.97[EUR][1000 genomes]
rs1559854	0.94[CEU][hapmap]
rs17508652	1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs2016830	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3914464	0.87[EUR][1000 genomes]
rs4310638	0.80[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4636699	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4943892	0.89[CEU][hapmap]
rs4943893	0.81[CEU][hapmap];0.89[YRI][hapmap]
rs4944487	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs500750	0.88[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs542988	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs61897664	0.89[ASN][1000 genomes]
rs61897669	0.94[EUR][1000 genomes]
rs61897674	0.86[ASN][1000 genomes]
rs6592176	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6592179	0.94[CEU][hapmap]
rs684067	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs7108323	0.89[CHB][hapmap];0.85[EUR][1000 genomes]
rs7115400	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7118287	0.85[EUR][1000 genomes]
rs7124614	0.81[CEU][hapmap];0.88[CHB][hapmap];0.85[EUR][1000 genomes]
rs7128063	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7128524	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1038641	chr11:83996453-84334045	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541103	chr11:83996453-84334045	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1049696	chr11:84039547-84116297	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84054200-84056000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:84055600-84056000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:84055800-84057000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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