Variant report
Variant | rs10898256 |
---|---|
Chromosome Location | chr11:71246074-71246075 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:41)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:41 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | JUND | chr11:71245784-71246129 | HepG2 | liver: | n/a | n/a |
2 | USF1 | chr11:71245994-71246195 | HepG2 | liver: | n/a | n/a |
3 | POLR2A | chr11:71245748-71246165 | HepG2 | liver: | n/a | n/a |
4 | MYBL2 | chr11:71245702-71246114 | HepG2 | liver: | n/a | n/a |
5 | POLR2A | chr11:71245800-71246502 | HepG2 | liver: | n/a | n/a |
6 | MAX | chr11:71245969-71246304 | K562 | blood: | n/a | n/a |
7 | GATA2 | chr11:71245898-71246396 | K562 | blood: | n/a | n/a |
8 | POLR2A | chr11:71245973-71246296 | K562 | blood: | n/a | n/a |
9 | SPI1 | chr11:71246004-71246350 | K562 | blood: | n/a | n/a |
10 | STAT5A | chr11:71245914-71246376 | K562 | blood: | n/a | n/a |
11 | FOXA1 | chr11:71245746-71246132 | HepG2 | liver: | n/a | n/a |
12 | FOXA1 | chr11:71245730-71246111 | HepG2 | liver: | n/a | n/a |
13 | FOXA1 | chr11:71245720-71246513 | HepG2 | liver: | n/a | n/a |
14 | FOSL2 | chr11:71245773-71246149 | HepG2 | liver: | n/a | n/a |
15 | SPI1 | chr11:71245885-71246547 | GM12878 | blood: | n/a | n/a |
16 | TBL1XR1 | chr11:71246069-71246382 | K562 | blood: | n/a | n/a |
17 | SPI1 | chr11:71246012-71246344 | GM12891 | blood: | n/a | n/a |
18 | TEAD4 | chr11:71245962-71246461 | K562 | blood: | n/a | n/a |
19 | SP1 | chr11:71245692-71246679 | HepG2 | liver: | n/a | n/a |
20 | GATA1 | chr11:71245966-71246483 | PBDE | blood: | n/a | n/a |
21 | POLR2A | chr11:71245960-71246325 | K562 | blood: | n/a | n/a |
22 | MAX | chr11:71245997-71246231 | K562 | blood: | n/a | n/a |
23 | POLR2A | chr11:71245828-71246159 | HepG2 | liver: | n/a | n/a |
24 | POLR2A | chr11:71245852-71246096 | HepG2 | liver: | n/a | n/a |
25 | HEY1 | chr11:71245663-71246734 | HepG2 | liver: | n/a | n/a |
26 | SPI1 | chr11:71245991-71246386 | HL-60 | blood: | n/a | n/a |
27 | CEBPD | chr11:71245996-71246415 | K562 | blood: | n/a | n/a |
28 | TAL1 | chr11:71245941-71246387 | K562 | blood: | n/a | n/a |
29 | MYBL2 | chr11:71245603-71246739 | HepG2 | liver: | n/a | n/a |
30 | HEY1 | chr11:71245782-71246157 | HepG2 | liver: | n/a | n/a |
31 | SPI1 | chr11:71245980-71246336 | GM12891 | blood: | n/a | n/a |
32 | EP300 | chr11:71246016-71246324 | K562 | blood: | n/a | n/a |
33 | GATA2 | chr11:71245982-71246325 | K562 | blood: | n/a | n/a |
34 | TEAD4 | chr11:71245933-71246454 | K562 | blood: | n/a | n/a |
35 | NR2F2 | chr11:71245971-71246336 | K562 | blood: | n/a | n/a |
36 | RXRA | chr11:71245772-71246662 | HepG2 | liver: | n/a | n/a |
37 | NR2F2 | chr11:71245879-71246373 | K562 | blood: | n/a | n/a |
38 | SPI1 | chr11:71246019-71246337 | K562 | blood: | n/a | n/a |
39 | SPI1 | chr11:71245994-71246372 | GM12878 | blood: | n/a | n/a |
40 | POLR2A | chr11:71245719-71246501 | HepG2 | liver: | n/a | n/a |
41 | ZBTB7A | chr11:71246003-71246196 | K562 | blood: | n/a | n/a |
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Variant related genes | Relation type |
---|---|
KRTAP5-8 | TF binding region |
rs_ID | r2[population] |
---|---|
rs10751114 | 0.82[EUR][1000 genomes] |
rs10792762 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs10792763 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs10792770 | 0.86[EUR][1000 genomes] |
rs10792776 | 0.86[EUR][1000 genomes] |
rs10792777 | 0.86[EUR][1000 genomes] |
rs10792778 | 0.86[EUR][1000 genomes] |
rs10792779 | 0.82[EUR][1000 genomes] |
rs10898254 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs10898255 | 0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10898261 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10898276 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs10898282 | 0.82[EUR][1000 genomes] |
rs10898286 | 0.86[EUR][1000 genomes] |
rs10898288 | 0.86[EUR][1000 genomes] |
rs10898289 | 0.86[EUR][1000 genomes] |
rs10898293 | 0.82[EUR][1000 genomes] |
rs11234102 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs11234148 | 0.82[EUR][1000 genomes] |
rs11234149 | 0.86[EUR][1000 genomes] |
rs11600364 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11604725 | 0.86[EUR][1000 genomes] |
rs11605448 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs11606159 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs12792437 | 0.81[EUR][1000 genomes] |
rs2663 | 0.86[EUR][1000 genomes] |
rs34762929 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs35647583 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs4129753 | 0.86[EUR][1000 genomes] |
rs4129754 | 0.86[EUR][1000 genomes] |
rs4945017 | 0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs55921335 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs6592186 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6592187 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6592188 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6592189 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6592190 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs67152879 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs67293913 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs67450797 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs68163405 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7113098 | 0.83[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs7125610 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7126613 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs72958323 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7358341 | 0.86[EUR][1000 genomes] |
rs7395845 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7926544 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7926576 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7926656 | 0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7938628 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7941700 | 0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7943893 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7949169 | 0.86[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv530623 | chr11:71088949-72020418 | Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 134 gene(s) | inside rSNPs | diseases |
2 | nsv468632 | chr11:71200320-71289089 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
3 | nsv555402 | chr11:71200320-71289089 | Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
4 | esv3372246 | chr11:71223101-71435819 | Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
5 | nsv897900 | chr11:71234107-71276909 | Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
6 | nsv897899 | chr11:71234107-71277981 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
7 | esv3363568 | chr11:71237277-71275754 | Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
8 | esv3425891 | chr11:71237287-71275790 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
9 | esv3528100 | chr11:71237332-71275725 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
10 | esv3528101 | chr11:71237332-71275725 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
11 | esv3432021 | chr11:71237346-71275760 | ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:71232800-71259800 | Weak transcription | Brain Cingulate Gyrus | brain |
2 | chr11:71239000-71246400 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
3 | chr11:71244000-71247200 | Enhancers | K562 | blood |
4 | chr11:71245200-71247200 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
5 | chr11:71245400-71246800 | Enhancers | Fetal Intestine Large | intestine |
6 | chr11:71245400-71247200 | Enhancers | Fetal Intestine Small | intestine |
7 | chr11:71245400-71247400 | Enhancers | Liver | Liver |
8 | chr11:71245800-71246400 | Flanking Active TSS | HepG2 | liver |
9 | chr11:71245800-71246600 | Enhancers | Pancreas | Pancrea |
10 | chr11:71245800-71246800 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
11 | chr11:71246000-71246200 | Enhancers | GM12878-XiMat | blood |