Variant report

Variant	rs10898311
Chromosome Location	chr11:71280248-71280249
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71279845..71280406-chr11:71290008..71290749,2	MCF-7	breast:
2	chr11:71278628..71280477-chr11:71289049..71291000,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249387	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10792768	0.81[CHB][hapmap]
rs10792769	0.81[CHB][hapmap]
rs10898312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11234079	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11234092	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs11234218	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12365630	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2665	0.81[CHB][hapmap]
rs66487667	0.88[ASN][1000 genomes]
rs760420	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv468632	chr11:71200320-71289089	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv555402	chr11:71200320-71289089	Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3372246	chr11:71223101-71435819	Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv825988	chr11:71277262-71294289	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv975200	chr11:71277624-71280675	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv975851	chr11:71278888-71295301	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3439523	chr11:71279704-71284002	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71277200-71280400	Enhancers	Adipose Nuclei	Adipose
2	chr11:71277600-71280400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:71277600-71281600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:71277600-71282800	Weak transcription	Fetal Intestine Small	intestine
5	chr11:71277600-71290400	Weak transcription	Right Atrium	heart
6	chr11:71278200-71281600	Weak transcription	Spleen	Spleen
7	chr11:71279000-71280600	Enhancers	Fetal Muscle Leg	muscle
8	chr11:71279000-71281200	Enhancers	Fetal Stomach	stomach
9	chr11:71279200-71280400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:71279400-71281400	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr11:71279600-71280400	Enhancers	Fetal Lung	lung
12	chr11:71279600-71282000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr11:71279800-71280400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr11:71279800-71280400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr11:71279800-71280600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr11:71280000-71280400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr11:71280000-71281800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:71280200-71280400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:71280200-71280400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:71280200-71280400	Bivalent Enhancer	HepG2	liver
21	chr11:71280200-71281800	Weak transcription	H9 Cell Line	embryonic stem cell

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