Variant report

Variant	rs10898443
Chromosome Location	chr11:85902463-85902464
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85778817..85780972-chr11:85901562..85903806,2	MCF-7	breast:
2	chr11:85900455..85902512-chr11:85903715..85906708,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254699	Chromatin interaction
ENSG00000254502	Chromatin interaction
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11234569	1.00[ASW][hapmap];1.00[LWK][hapmap];0.84[AFR][1000 genomes]
rs12295362	1.00[ASW][hapmap];1.00[LWK][hapmap];0.84[AFR][1000 genomes]
rs17745594	0.84[AFR][1000 genomes]
rs3888884	0.84[AFR][1000 genomes]
rs61904268	0.84[AFR][1000 genomes]
rs72962077	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv2757460	chr11:85869944-85905513	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759846	chr11:85869944-85905513	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv555660	chr11:85891661-85905715	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10898443	C11orf73	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85886000-85903000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:85894400-85904600	Weak transcription	Pancreas	Pancrea
3	chr11:85894800-85902800	Weak transcription	Primary B cells from cord blood	blood
4	chr11:85895000-85903200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:85895000-85903600	Weak transcription	Right Ventricle	heart
6	chr11:85895000-85904000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:85895000-85904000	Weak transcription	Fetal Thymus	thymus
8	chr11:85895200-85903400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:85897800-85904000	Weak transcription	Brain Angular Gyrus	brain
10	chr11:85897800-85904000	Weak transcription	Fetal Muscle Leg	muscle
11	chr11:85898400-85903200	Weak transcription	Adipose Nuclei	Adipose
12	chr11:85898400-85903800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:85898400-85913400	Weak transcription	Left Ventricle	heart
14	chr11:85898600-85904000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr11:85898800-85903200	Weak transcription	Brain Anterior Caudate	brain
16	chr11:85898800-85903800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:85900600-85904200	Weak transcription	Stomach Mucosa	stomach
18	chr11:85902000-85908800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr11:85902200-85903800	Enhancers	K562	blood
20	chr11:85902400-85902800	Weak transcription	Brain Hippocampus Middle	brain
21	chr11:85902400-85902800	Weak transcription	Hela-S3	cervix
22	chr11:85902400-85903000	Enhancers	Monocytes-CD14+_RO01746	blood

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