Variant report

Variant	rs12295362
Chromosome Location	chr11:85900117-85900118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85898887..85900627-chr11:85954638..85957310,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000074266	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10792833	0.86[EUR][1000 genomes]
rs10898443	1.00[ASW][hapmap];1.00[LWK][hapmap];0.84[AFR][1000 genomes]
rs11234569	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11602811	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11603136	0.91[ASN][1000 genomes]
rs12271958	1.00[ASN][1000 genomes]
rs12277271	0.92[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17745594	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3888884	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61904268	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107958	0.84[EUR][1000 genomes]
rs72962077	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv2757460	chr11:85869944-85905513	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759846	chr11:85869944-85905513	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv999880	chr11:85888638-85902307	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv555651	chr11:85890389-85900117	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv555659	chr11:85891661-85900117	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv555660	chr11:85891661-85905715	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85886000-85903000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:85894400-85904600	Weak transcription	Pancreas	Pancrea
3	chr11:85894800-85902800	Weak transcription	Primary B cells from cord blood	blood
4	chr11:85895000-85903200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:85895000-85903600	Weak transcription	Right Ventricle	heart
6	chr11:85895000-85904000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:85895000-85904000	Weak transcription	Fetal Thymus	thymus
8	chr11:85895200-85903400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:85896000-85902200	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:85897600-85902200	Weak transcription	Hela-S3	cervix
11	chr11:85897800-85902400	Weak transcription	Psoas Muscle	Psoas
12	chr11:85897800-85904000	Weak transcription	Brain Angular Gyrus	brain
13	chr11:85897800-85904000	Weak transcription	Fetal Muscle Leg	muscle
14	chr11:85898400-85900200	Weak transcription	K562	blood
15	chr11:85898400-85903200	Weak transcription	Adipose Nuclei	Adipose
16	chr11:85898400-85903800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:85898400-85913400	Weak transcription	Left Ventricle	heart
18	chr11:85898600-85904000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:85898800-85903200	Weak transcription	Brain Anterior Caudate	brain
20	chr11:85898800-85903800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:85899600-85900600	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr11:85899800-85900800	Enhancers	Primary monocytes fromperipheralblood	blood

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