Variant report

Variant	rs12271958
Chromosome Location	chr11:85882691-85882692
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85809081..85811132-chr11:85882355..85885096,2	K562	blood:
2	chr11:85858516..85861097-chr11:85882162..85885113,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11234569	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11602811	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11603136	0.91[ASN][1000 genomes]
rs12277271	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12295362	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17745594	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3888884	1.00[ASN][1000 genomes]
rs61904268	1.00[ASN][1000 genomes]
rs72962077	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv2757460	chr11:85869944-85905513	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759846	chr11:85869944-85905513	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85873600-85883800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr11:85873600-85883800	Weak transcription	HSMMtube	muscle
3	chr11:85873600-85884000	Weak transcription	Right Atrium	heart
4	chr11:85873800-85883800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:85874000-85885400	Weak transcription	Small Intestine	intestine
6	chr11:85874200-85884000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:85874600-85884000	Weak transcription	A549	lung
8	chr11:85875000-85883800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:85875400-85883600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:85875800-85883800	Weak transcription	HSMM	muscle
11	chr11:85876000-85884000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:85876400-85883200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:85879000-85884000	Weak transcription	Brain Anterior Caudate	brain
14	chr11:85879000-85885600	Weak transcription	Psoas Muscle	Psoas
15	chr11:85879200-85883600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:85879200-85883600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:85879200-85883800	Weak transcription	Adipose Nuclei	Adipose
18	chr11:85879200-85883800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr11:85879200-85884200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:85879200-85884600	Weak transcription	Liver	Liver
21	chr11:85879400-85883800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:85879400-85884000	Weak transcription	Fetal Lung	lung
23	chr11:85879400-85884800	Weak transcription	HepG2	liver
24	chr11:85879800-85884200	Weak transcription	Fetal Stomach	stomach
25	chr11:85882200-85885200	Enhancers	K562	blood
26	chr11:85882400-85883400	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr11:85882400-85883600	Weak transcription	HUVEC	blood vessel
28	chr11:85882400-85884600	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr11:85882400-85884800	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr11:85882400-85885200	Enhancers	Hela-S3	cervix
31	chr11:85882600-85882800	Enhancers	Fetal Muscle Trunk	muscle
32	chr11:85882600-85882800	Enhancers	Spleen	Spleen
33	chr11:85882600-85884800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:85882600-85887000	Enhancers	Fetal Muscle Leg	muscle
35	chr11:85882600-85887800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:85882600-85890800	Enhancers	Placenta	Placenta
37	chr11:85882600-85891600	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links