Variant report

Variant	rs10898482
Chromosome Location	chr11:86129977-86129978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:22)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:22 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr11:86129900-86130418	HCT-116	colon:	n/a	n/a
2	RAD21	chr11:86129966-86130305	GM12878	blood:	n/a	n/a
3	SMC3	chr11:86129974-86130335	GM12878	blood:	n/a	n/a
4	RAD21	chr11:86129926-86130394	H1-hESC	embryonic stem cell:	n/a	n/a
5	RAD21	chr11:86129970-86130309	SK-N-SH_RA	brain:	n/a	n/a
6	RAD21	chr11:86129854-86130472	MCF-7	breast:	n/a	n/a
7	CTCF	chr11:86129963-86130326	MCF-7	breast:	n/a	n/a
8	CTCF	chr11:86129940-86130090	HFF-Myc	foreskin:	n/a	n/a
9	CTCF	chr11:86129844-86130263	HCT-116	colon:	n/a	n/a
10	RAD21	chr11:86129878-86130389	MCF-7	breast:	n/a	n/a
11	RAD21	chr11:86129899-86130427	SK-N-SH	brain:	n/a	n/a
12	CTCF	chr11:86129731-86130411	SK-N-SH	brain:	n/a	n/a
13	CTCF	chr11:86129965-86130329	MCF-7	breast:	n/a	n/a
14	RAD21	chr11:86129918-86130404	ECC-1	luminal epithelium:	n/a	n/a
15	RAD21	chr11:86129929-86130280	ECC-1	luminal epithelium:	n/a	n/a
16	RAD21	chr11:86129898-86130307	H1-hESC	embryonic stem cell:	n/a	n/a
17	CTCF	chr11:86129975-86130358	GM12878	blood:	n/a	n/a
18	RAD21	chr11:86129956-86130331	H1-hESC	embryonic stem cell:	n/a	n/a
19	RAD21	chr11:86129890-86130404	A549	lung:	n/a	n/a
20	RAD21	chr11:86129951-86130445	HCT-116	colon:	n/a	n/a
21	CTCF	chr11:86129971-86130339	K562	blood:	n/a	n/a
22	RAD21	chr11:86129917-86130241	HepG2	liver:	n/a	n/a

No data

Variant related genes	Relation type
CCDC81	TF binding region

rs_ID	r²[population]
rs10444375	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[AFR][1000 genomes]
rs11234616	1.00[CHD][hapmap]

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86106600-86134600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:86108600-86138600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:86117800-86142200	Weak transcription	Fetal Stomach	stomach
4	chr11:86118200-86130400	Weak transcription	Brain Substantia Nigra	brain
5	chr11:86118200-86151000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr11:86118400-86131000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:86118400-86142800	Weak transcription	Left Ventricle	heart
8	chr11:86119400-86135000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:86119600-86142200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:86122600-86133400	Weak transcription	Ovary	ovary
11	chr11:86123600-86136800	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:86124600-86142200	Weak transcription	Aorta	Aorta
13	chr11:86124800-86136600	Weak transcription	Brain Anterior Caudate	brain
14	chr11:86126200-86130000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:86127800-86133200	Weak transcription	K562	blood
16	chr11:86128000-86130200	Weak transcription	NHDF-Ad	bronchial
17	chr11:86128200-86130200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:86128200-86133200	Weak transcription	Fetal Intestine Large	intestine
19	chr11:86128400-86130400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:86129600-86130200	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr11:86129800-86130600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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