Variant report

Variant	rs11234616
Chromosome Location	chr11:86034414-86034415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10792844	0.81[CEU][hapmap]
rs10898482	1.00[CHD][hapmap]
rs11234615	0.80[AMR][1000 genomes]
rs12223670	0.81[CEU][hapmap]
rs7122629	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508643	chr11:85988577-86047719	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11234616	C11orf73	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86014200-86052000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:86014200-86055400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:86014200-86057400	Weak transcription	Aorta	Aorta
4	chr11:86014400-86066600	Weak transcription	HSMMtube	muscle
5	chr11:86014600-86035200	Weak transcription	NH-A	brain
6	chr11:86014600-86045600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:86014600-86045800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:86014600-86045800	Weak transcription	Right Ventricle	heart
9	chr11:86014600-86048400	Weak transcription	Brain Germinal Matrix	brain
10	chr11:86014600-86048800	Weak transcription	Thymus	Thymus
11	chr11:86014600-86049000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:86014600-86049800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:86014600-86066400	Weak transcription	Fetal Kidney	kidney
14	chr11:86014800-86035800	Weak transcription	Brain Anterior Caudate	brain
15	chr11:86014800-86036000	Weak transcription	Brain Substantia Nigra	brain
16	chr11:86014800-86040600	Weak transcription	Brain Angular Gyrus	brain
17	chr11:86014800-86045800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:86014800-86049000	Weak transcription	Hela-S3	cervix
19	chr11:86014800-86049200	Weak transcription	HUVEC	blood vessel
20	chr11:86014800-86058600	Weak transcription	NHLF	lung
21	chr11:86015000-86036000	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:86015000-86046000	Weak transcription	NHEK	skin
23	chr11:86015000-86061000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:86015200-86045800	Weak transcription	Osteobl	bone
25	chr11:86015200-86051400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:86015400-86036200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr11:86015400-86045800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr11:86015400-86048400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr11:86015400-86049000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr11:86015400-86059600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr11:86015600-86048600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr11:86020400-86057200	Weak transcription	Small Intestine	intestine
33	chr11:86022000-86048800	Weak transcription	Gastric	stomach
34	chr11:86022000-86061000	Weak transcription	Esophagus	oesophagus
35	chr11:86023800-86061200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr11:86024000-86035000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:86024000-86042600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:86024200-86052200	Weak transcription	Colonic Mucosa	Colon
39	chr11:86024600-86057400	Weak transcription	Pancreas	Pancrea
40	chr11:86025000-86061600	Weak transcription	Psoas Muscle	Psoas
41	chr11:86025200-86035800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:86025200-86057800	Weak transcription	HepG2	liver
43	chr11:86025600-86035200	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr11:86026000-86035000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr11:86026000-86036600	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr11:86026000-86046000	Weak transcription	HMEC	breast
47	chr11:86026000-86049000	Weak transcription	K562	blood
48	chr11:86026200-86035600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr11:86026800-86037400	Strong transcription	Fetal Stomach	stomach
50	chr11:86027400-86035200	Weak transcription	Dnd41	blood

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