Variant report

Variant	rs10898815
Chromosome Location	chr11:71739423-71739424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:71738561..71741473-chr11:71789951..71791832,3	MCF-7	breast:
2	chr11:71737868..71740326-chr11:71811757..71813458,2	K562	blood:
3	chr11:71738599..71741575-chr11:71937321..71940011,2	MCF-7	breast:
4	chr11:71736992..71739760-chr11:71808437..71810726,3	MCF-7	breast:
5	chr11:71738692..71740500-chr11:71910713..71912758,2	K562	blood:
6	chr11:71737580..71740720-chr11:71811756..71813797,3	MCF-7	breast:
7	chr11:71736279..71741735-chr11:71748156..71753835,11	MCF-7	breast:
8	chr11:71738903..71741588-chr11:71790245..71792592,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000149357	Chromatin interaction
ENSG00000165458	Chromatin interaction
ENSG00000184154	Chromatin interaction
ENSG00000137497	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10898820	0.96[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes]
rs11235408	0.83[AFR][1000 genomes]
rs3793941	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4073394	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs4944229	0.82[AFR][1000 genomes]
rs7939902	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10898815	P2RY2	cis	parietal	SCAN
rs10898815	IL18BP	cis	cerebellum	SCAN
rs10898815	FAM86C1	cis	Muscle Skeletal	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71709800-71748000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:71710800-71743200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:71710800-71748000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:71711000-71741800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:71711000-71748800	Strong transcription	Dnd41	blood
6	chr11:71711200-71742400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr11:71711400-71747600	Strong transcription	Fetal Thymus	thymus
8	chr11:71711600-71747800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr11:71711800-71742800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:71711800-71743200	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr11:71711800-71744200	Strong transcription	Primary B cells from peripheral blood	blood
12	chr11:71712800-71741000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr11:71713400-71740800	Strong transcription	HepG2	liver
14	chr11:71713400-71741600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr11:71713800-71742400	Strong transcription	Primary hematopoietic stem cells	blood
16	chr11:71714600-71742400	Strong transcription	Hela-S3	cervix
17	chr11:71725200-71741400	Strong transcription	Duodenum Mucosa	Duodenum
18	chr11:71725600-71747400	Strong transcription	Thymus	Thymus
19	chr11:71725800-71740200	Strong transcription	Gastric	stomach
20	chr11:71726600-71740400	Strong transcription	K562	blood
21	chr11:71727200-71740600	Strong transcription	Esophagus	oesophagus
22	chr11:71727800-71750200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr11:71730600-71748800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:71734200-71743000	Genic enhancers	Fetal Intestine Large	intestine
25	chr11:71734400-71744400	Genic enhancers	Fetal Intestine Small	intestine
26	chr11:71734600-71743400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr11:71735000-71740600	Genic enhancers	Colon Smooth Muscle	Colon
28	chr11:71735400-71739600	Weak transcription	Fetal Brain Male	brain
29	chr11:71735400-71740200	Genic enhancers	Brain Anterior Caudate	brain
30	chr11:71735400-71740400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
31	chr11:71735400-71750000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr11:71735600-71739600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr11:71735600-71739800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr11:71735800-71740400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:71735800-71750000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr11:71736400-71740600	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr11:71736400-71747200	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr11:71736400-71748000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
39	chr11:71736600-71740600	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr11:71736600-71747800	Strong transcription	Primary B cells from cord blood	blood
41	chr11:71736600-71748000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
42	chr11:71736800-71739800	Genic enhancers	Fetal Kidney	kidney
43	chr11:71736800-71740400	Strong transcription	HMEC	breast
44	chr11:71736800-71742000	Strong transcription	Fetal Muscle Trunk	muscle
45	chr11:71737000-71740600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr11:71737200-71740400	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr11:71737200-71742200	Strong transcription	HUVEC	blood vessel
48	chr11:71737400-71740000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:71737400-71740000	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr11:71737400-71740400	Strong transcription	Lung	lung

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