Variant report

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:71831890..71834661-chr11:71839179..71841766,3	K562	blood:
2	chr11:71831936..71834316-chr11:72143307..72145560,2	K562	blood:
3	chr11:71822719..71827251-chr11:71832148..71836901,10	MCF-7	breast:
4	chr11:71831890..71834661-chr11:71839511..71841766,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FOLR3-1	chr11:71830751-71832451	XLOC_009202
2	lnc-FOLR3-1	chr11:71830751-71832451	XLOC_009202

No data

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10898815	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10898820	0.96[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10898822	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3793941	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap]
rs7939902	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs4073394	NUMA1	cis	multi-tissue	Pritchard
rs4073394	IL18BP	cis	cerebellum	SCAN
rs4073394	NUMA1	cis	Liver	GTEx
rs4073394	P2RY2	cis	parietal	SCAN
rs4073394	FAM86C1	cis	Muscle Skeletal	GTEx

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71824800-71834600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:71827400-71833400	Weak transcription	Hela-S3	cervix
3	chr11:71828000-71834200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:71828200-71834200	Weak transcription	NHEK	skin
5	chr11:71828400-71850800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:71830400-71833400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr11:71830600-71833200	Weak transcription	K562	blood
8	chr11:71831200-71835000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr11:71831400-71835000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr11:71832000-71832800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:71832200-71833400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr11:71832200-71834000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:71832200-71834400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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