Variant report

Variant	rs10898884
Chromosome Location	chr11:72559568-72559569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72549730..72551494-chr11:72558508..72560707,2	MCF-7	breast:
2	chr11:72550927..72553163-chr11:72557469..72559694,2	MCF-7	breast:
3	chr11:72435861..72437061-chr11:72559108..72560533,7	K562	blood:
4	chr11:72554260..72556013-chr11:72557786..72559604,2	K562	blood:
5	chr11:72487983..72489768-chr11:72558586..72560433,2	K562	blood:
6	chr11:72542630..72543210-chr11:72559500..72560549,3	K562	blood:
7	chr11:72558950..72560859-chr11:72888092..72889897,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137478	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10898887	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10898893	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs11235639	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs11235641	0.89[GIH][hapmap]
rs12418930	0.89[GIH][hapmap]
rs3765638	0.89[GIH][hapmap]
rs7926133	1.00[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10898884	P2RY6	cis	cerebellum	SCAN

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72540200-72616600	Strong transcription	Primary B cells from peripheral blood	blood
2	chr11:72540600-72589800	Strong transcription	Primary B cells from cord blood	blood
3	chr11:72543200-72562200	Weak transcription	A549	lung
4	chr11:72543200-72614800	Weak transcription	Psoas Muscle	Psoas
5	chr11:72543400-72560800	Strong transcription	GM12878-XiMat	blood
6	chr11:72543400-72603000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:72545200-72561000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:72546600-72561000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:72546800-72561400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:72547400-72561200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr11:72548000-72559600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr11:72548400-72561000	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr11:72548400-72561000	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr11:72550000-72600400	Weak transcription	Pancreas	Pancrea
15	chr11:72551200-72563000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:72552000-72567000	Weak transcription	NH-A	brain
17	chr11:72552200-72562000	Weak transcription	Esophagus	oesophagus
18	chr11:72552200-72575400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:72552200-72580400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:72552400-72597400	Weak transcription	HMEC	breast
21	chr11:72552800-72578000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr11:72553400-72567000	Weak transcription	HUVEC	blood vessel
23	chr11:72553600-72576000	Weak transcription	NHEK	skin
24	chr11:72553800-72560600	Weak transcription	Gastric	stomach
25	chr11:72554400-72560000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:72554400-72560200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr11:72554400-72560200	Weak transcription	Placenta	Placenta
28	chr11:72554400-72564000	Weak transcription	Brain Germinal Matrix	brain
29	chr11:72554400-72567000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr11:72554400-72567000	Weak transcription	Adipose Nuclei	Adipose
31	chr11:72554400-72567200	Weak transcription	Brain Substantia Nigra	brain
32	chr11:72554400-72574200	Weak transcription	Aorta	Aorta
33	chr11:72554400-72576000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr11:72554600-72559800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr11:72554600-72559800	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr11:72554600-72560000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr11:72554600-72563200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr11:72554600-72567000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:72554600-72567600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr11:72554600-72567800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr11:72554600-72568000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:72554600-72570600	Weak transcription	Colonic Mucosa	Colon
43	chr11:72554600-72577000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:72554600-72577800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr11:72554600-72580400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr11:72554600-72595800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr11:72554600-72596600	Weak transcription	Fetal Brain Female	brain
48	chr11:72554800-72560400	Weak transcription	HSMM	muscle
49	chr11:72554800-72567200	Weak transcription	Colon Smooth Muscle	Colon
50	chr11:72554800-72578000	Weak transcription	Rectal Mucosa Donor 29	rectum

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