Variant report

Variant	rs10898887
Chromosome Location	chr11:72581294-72581295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72580088..72581673-chr11:72852885..72854968,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137478	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10898884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10898893	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs11235639	0.80[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs11235641	0.89[GIH][hapmap]
rs12418930	0.89[GIH][hapmap]
rs3765638	0.89[GIH][hapmap]
rs7926133	1.00[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10898887	P2RY6	cis	cerebellum	SCAN

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72540200-72616600	Strong transcription	Primary B cells from peripheral blood	blood
2	chr11:72540600-72589800	Strong transcription	Primary B cells from cord blood	blood
3	chr11:72543200-72614800	Weak transcription	Psoas Muscle	Psoas
4	chr11:72543400-72603000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:72550000-72600400	Weak transcription	Pancreas	Pancrea
6	chr11:72552400-72597400	Weak transcription	HMEC	breast
7	chr11:72554600-72595800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr11:72554600-72596600	Weak transcription	Fetal Brain Female	brain
9	chr11:72555600-72586400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:72555800-72595600	Weak transcription	Thymus	Thymus
11	chr11:72556000-72586400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:72556800-72596600	Weak transcription	Spleen	Spleen
13	chr11:72557600-72595600	Weak transcription	Lung	lung
14	chr11:72567200-72612200	Weak transcription	Small Intestine	intestine
15	chr11:72568400-72582200	Weak transcription	Brain Substantia Nigra	brain
16	chr11:72568600-72582000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:72571200-72582200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:72573400-72582000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:72574600-72589600	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr11:72574800-72590800	Strong transcription	GM12878-XiMat	blood
21	chr11:72575000-72599200	Weak transcription	Hela-S3	cervix
22	chr11:72576000-72596400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr11:72576000-72596600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr11:72576000-72596800	Weak transcription	Ovary	ovary
25	chr11:72576200-72582200	Weak transcription	Brain Anterior Caudate	brain
26	chr11:72576200-72596800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr11:72576400-72596400	Weak transcription	NHEK	skin
28	chr11:72576800-72596400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr11:72576800-72602400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:72577000-72582200	Weak transcription	Colon Smooth Muscle	Colon
31	chr11:72577000-72596400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr11:72577000-72596800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr11:72577000-72597000	Weak transcription	Brain Angular Gyrus	brain
34	chr11:72577200-72582200	Weak transcription	Fetal Kidney	kidney
35	chr11:72577200-72582200	Weak transcription	Fetal Stomach	stomach
36	chr11:72577200-72596400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:72577200-72596400	Weak transcription	Fetal Muscle Leg	muscle
38	chr11:72577200-72596400	Weak transcription	Right Ventricle	heart
39	chr11:72577200-72596400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr11:72577200-72596600	Weak transcription	Adipose Nuclei	Adipose
41	chr11:72577200-72651600	Weak transcription	Gastric	stomach
42	chr11:72577400-72582600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:72577400-72596400	Weak transcription	NHLF	lung
44	chr11:72577400-72597000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr11:72577400-72599600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:72577600-72595600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr11:72577600-72596800	Weak transcription	Aorta	Aorta
48	chr11:72577600-72597000	Weak transcription	Brain Germinal Matrix	brain
49	chr11:72578400-72582000	Weak transcription	Brain Hippocampus Middle	brain
50	chr11:72578400-72595800	Weak transcription	Duodenum Mucosa	Duodenum

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