Variant report

Variant	rs10899288
Chromosome Location	chr11:76518600-76518601
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:76489897..76492683-chr11:76518337..76520113,2	MCF-7	breast:
2	chr11:76518111..76519175-chr11:76629549..76632027,10	K562	blood:
3	chr11:76444321..76446462-chr11:76517342..76520030,2	K562	blood:
4	chr11:76518255..76520298-chr11:76572077..76574099,2	MCF-7	breast:
5	chr11:76504952..76506827-chr11:76516420..76519216,2	MCF-7	breast:
6	chr11:76497829..76500317-chr11:76518217..76520054,2	MCF-7	breast:
7	chr11:76517896..76518709-chr11:76549236..76550386,4	K562	blood:
8	chr11:76516686..76519995-chr11:76522035..76525250,3	MCF-7	breast:
9	chr11:76511026..76513803-chr11:76516270..76519696,3	K562	blood:
10	chr11:76444616..76445153-chr11:76518177..76519095,2	MCF-7	breast:
11	chr11:76516373..76518435-chr11:76518489..76520220,2	MCF-7	breast:
12	chr11:76511280..76512868-chr11:76516477..76518831,2	MCF-7	breast:
13	chr11:76517508..76519118-chr11:76629396..76631998,9	MCF-7	breast:
14	chr11:76518187..76518718-chr11:76757188..76757708,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000261578	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1561647	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897931	chr11:76489673-76540708	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76510600-76520200	Enhancers	Adipose Nuclei	Adipose
2	chr11:76510800-76521200	Weak transcription	Spleen	Spleen
3	chr11:76511000-76521200	Weak transcription	HUVEC	blood vessel
4	chr11:76511000-76521400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr11:76511800-76521200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:76512800-76518600	Enhancers	A549	lung
7	chr11:76513000-76518600	Weak transcription	Fetal Intestine Large	intestine
8	chr11:76513600-76520200	Enhancers	Placenta	Placenta
9	chr11:76513800-76518600	Enhancers	Fetal Thymus	thymus
10	chr11:76514800-76518800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:76516000-76518600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:76516000-76519400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:76516200-76520200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr11:76517000-76518600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr11:76517000-76518800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:76517000-76521000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:76517200-76519600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:76517400-76518800	Enhancers	Right Atrium	heart
19	chr11:76517600-76518800	Enhancers	Fetal Lung	lung
20	chr11:76517600-76519400	Enhancers	K562	blood
21	chr11:76517600-76519600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:76517800-76518600	Enhancers	Fetal Heart	heart
23	chr11:76517800-76519600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:76518000-76518600	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr11:76518000-76518600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:76518000-76518800	Enhancers	NHLF	lung
27	chr11:76518200-76518600	Enhancers	H1 Cell Line	embryonic stem cell
28	chr11:76518200-76518600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:76518200-76518600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:76518200-76518600	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr11:76518200-76518600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr11:76518200-76518600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:76518200-76518600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr11:76518200-76518600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:76518200-76518600	Flanking Active TSS	Brain Substantia Nigra	brain
36	chr11:76518200-76518600	Enhancers	Esophagus	oesophagus
37	chr11:76518200-76518600	Enhancers	Left Ventricle	heart
38	chr11:76518200-76518600	Enhancers	Placenta Amnion	Placenta Amnion
39	chr11:76518200-76518600	Enhancers	Right Ventricle	heart
40	chr11:76518200-76518600	Enhancers	Stomach Mucosa	stomach
41	chr11:76518200-76518600	Flanking Active TSS	Hela-S3	cervix
42	chr11:76518200-76518600	Bivalent Enhancer	HepG2	liver
43	chr11:76518200-76518600	Enhancers	NH-A	brain
44	chr11:76518200-76518600	Flanking Active TSS	NHDF-Ad	bronchial
45	chr11:76518200-76518800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:76518200-76518800	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr11:76518200-76518800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:76518200-76518800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:76518200-76518800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
50	chr11:76518200-76518800	Bivalent Enhancer	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links