Variant report

Variant	rs1561647
Chromosome Location	chr11:76549212-76549213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76546670..76552147-chr11:76556220..76560576,6	K562	blood:
2	chr11:76547374..76550137-chr11:76551533..76553464,2	K562	blood:
3	chr11:76494016..76496721-chr11:76548285..76549802,2	MCF-7	breast:
4	chr11:76548072..76552147-chr11:76556220..76559677,3	K562	blood:
5	chr11:76481325..76485010-chr11:76548090..76550777,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255100	Chromatin interaction
ENSG00000182704	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10899288	0.91[CEU][hapmap]
rs11236965	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236967	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11236970	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11236987	0.90[CHB][hapmap]
rs11237013	0.90[CHB][hapmap]
rs11237048	0.86[CHB][hapmap]
rs11237053	0.85[CHB][hapmap]
rs12222735	0.90[CHB][hapmap]
rs12275338	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17135325	0.86[CHB][hapmap]
rs2119454	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55949612	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57152887	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57539702	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58026572	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58738182	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7112631	0.80[EUR][1000 genomes]
rs7129920	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76545000-76551200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr11:76546000-76550600	Enhancers	Adipose Nuclei	Adipose
3	chr11:76546400-76551200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr11:76546800-76551600	Enhancers	K562	blood
5	chr11:76547000-76549600	Enhancers	Hela-S3	cervix
6	chr11:76547000-76549600	Enhancers	HMEC	breast
7	chr11:76547000-76550000	Enhancers	Gastric	stomach
8	chr11:76547000-76550000	Enhancers	Pancreas	Pancrea
9	chr11:76547000-76550600	Enhancers	Lung	lung
10	chr11:76547000-76550800	Enhancers	Placenta	Placenta
11	chr11:76547000-76551200	Enhancers	Duodenum Mucosa	Duodenum
12	chr11:76547000-76551200	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr11:76547200-76549600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:76547200-76549600	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr11:76547200-76550000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr11:76547200-76550400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:76547200-76550400	Enhancers	Fetal Muscle Leg	muscle
18	chr11:76547200-76550600	Enhancers	Colonic Mucosa	Colon
19	chr11:76547200-76550600	Enhancers	Esophagus	oesophagus
20	chr11:76547400-76549600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:76547400-76551200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:76547600-76549800	Enhancers	Brain Substantia Nigra	brain
23	chr11:76547600-76550600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:76547800-76549400	Weak transcription	Colon Smooth Muscle	Colon
25	chr11:76547800-76550000	Enhancers	Left Ventricle	heart
26	chr11:76547800-76550200	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr11:76547800-76550200	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr11:76547800-76550400	Enhancers	Brain Hippocampus Middle	brain
29	chr11:76548000-76550200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:76548000-76550200	Weak transcription	NHEK	skin
31	chr11:76548000-76550800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:76548000-76551400	Enhancers	Stomach Mucosa	stomach
33	chr11:76548200-76549400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr11:76548200-76550000	Enhancers	Brain Cingulate Gyrus	brain
35	chr11:76548200-76552800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:76548400-76549600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr11:76548400-76549800	Enhancers	Brain Angular Gyrus	brain
38	chr11:76548400-76550200	Weak transcription	A549	lung
39	chr11:76548400-76550800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:76548600-76549400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:76548600-76550000	Enhancers	Brain Anterior Caudate	brain
42	chr11:76548600-76552000	Enhancers	HUVEC	blood vessel
43	chr11:76548800-76549400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:76548800-76549400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr11:76548800-76549400	Bivalent Enhancer	Fetal Stomach	stomach
46	chr11:76548800-76549600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr11:76548800-76549600	Enhancers	Right Atrium	heart
48	chr11:76548800-76549800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr11:76548800-76550000	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr11:76548800-76550600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links