Variant report
| Variant | rs57539702 |
|---|---|
| Chromosome Location | chr11:76526761-76526762 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-LRRC32-7 | chr11:76526142-76527994 | NONHSAT023194 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs11236952 | 0.85[EUR][1000 genomes] |
| rs11236965 | 0.93[ASN][1000 genomes] |
| rs11236967 | 0.89[ASN][1000 genomes] |
| rs11236970 | 0.86[ASN][1000 genomes] |
| rs12275338 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1561647 | 0.81[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs55949612 | 0.84[ASN][1000 genomes] |
| rs57152887 | 0.80[ASN][1000 genomes] |
| rs58026572 | 0.89[ASN][1000 genomes] |
| rs58738182 | 0.80[ASN][1000 genomes] |
| rs7129920 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv897931 | chr11:76489673-76540708 | Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
