Variant report

Variant	rs55949612
Chromosome Location	chr11:76558895-76558896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11236965	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11236967	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236970	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12275338	0.85[ASN][1000 genomes]
rs1561647	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2119454	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57152887	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57539702	0.84[ASN][1000 genomes]
rs58026572	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58738182	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7129920	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76549600-76561000	Weak transcription	Right Atrium	heart
2	chr11:76549600-76570800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:76549800-76572000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:76550600-76566400	Weak transcription	Lung	lung
5	chr11:76553400-76560400	Weak transcription	K562	blood
6	chr11:76556400-76561600	Weak transcription	Liver	Liver
7	chr11:76557200-76559200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:76557400-76559200	Enhancers	HepG2	liver
9	chr11:76558200-76559000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr11:76558400-76559000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:76558400-76559000	Enhancers	Ovary	ovary
12	chr11:76558400-76559200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:76558400-76559200	Enhancers	Placenta	Placenta
14	chr11:76558600-76559000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:76558800-76559000	Enhancers	Left Ventricle	heart
16	chr11:76558800-76560400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:76558800-76560400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:76558800-76561600	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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