Variant report

Variant	rs11236965
Chromosome Location	chr11:76548083-76548084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76546670..76552147-chr11:76556220..76560576,6	K562	blood:
2	chr11:76547374..76550137-chr11:76551533..76553464,2	K562	blood:
3	chr11:76548072..76552147-chr11:76556220..76559677,3	K562	blood:
4	chr11:76520966..76521849-chr11:76547711..76548249,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10899288	0.91[CEU][hapmap]
rs11236967	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236970	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11236987	0.89[CHB][hapmap]
rs11237013	0.89[CHB][hapmap]
rs11237048	0.84[CHB][hapmap]
rs11237053	0.84[CHB][hapmap]
rs12222735	0.89[CHB][hapmap]
rs12275338	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1561647	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17135325	0.84[CHB][hapmap]
rs2119454	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55949612	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57152887	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57539702	0.93[ASN][1000 genomes]
rs58026572	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58738182	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7112631	0.80[EUR][1000 genomes]
rs7129920	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76535400-76549000	Weak transcription	Small Intestine	intestine
2	chr11:76542400-76548800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:76544600-76548800	Enhancers	Fetal Stomach	stomach
4	chr11:76545000-76551200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr11:76545200-76548200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:76545800-76548600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:76546000-76550600	Enhancers	Adipose Nuclei	Adipose
8	chr11:76546400-76551200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr11:76546800-76548800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:76546800-76551600	Enhancers	K562	blood
11	chr11:76547000-76548200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:76547000-76548200	Enhancers	HUVEC	blood vessel
13	chr11:76547000-76548400	Enhancers	A549	lung
14	chr11:76547000-76549600	Enhancers	Hela-S3	cervix
15	chr11:76547000-76549600	Enhancers	HMEC	breast
16	chr11:76547000-76550000	Enhancers	Gastric	stomach
17	chr11:76547000-76550000	Enhancers	Pancreas	Pancrea
18	chr11:76547000-76550600	Enhancers	Lung	lung
19	chr11:76547000-76550800	Enhancers	Placenta	Placenta
20	chr11:76547000-76551200	Enhancers	Duodenum Mucosa	Duodenum
21	chr11:76547000-76551200	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr11:76547200-76549200	Enhancers	Spleen	Spleen
23	chr11:76547200-76549600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:76547200-76549600	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr11:76547200-76550000	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr11:76547200-76550400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:76547200-76550400	Enhancers	Fetal Muscle Leg	muscle
28	chr11:76547200-76550600	Enhancers	Colonic Mucosa	Colon
29	chr11:76547200-76550600	Enhancers	Esophagus	oesophagus
30	chr11:76547400-76548200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:76547400-76548200	Enhancers	Fetal Muscle Trunk	muscle
32	chr11:76547400-76549600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr11:76547400-76551200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr11:76547600-76548200	Enhancers	Fetal Lung	lung
35	chr11:76547600-76548400	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr11:76547600-76548400	Enhancers	Right Atrium	heart
37	chr11:76547600-76548600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr11:76547600-76549200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:76547600-76549200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
40	chr11:76547600-76549800	Enhancers	Brain Substantia Nigra	brain
41	chr11:76547600-76550600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:76547800-76548400	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
43	chr11:76547800-76548800	Weak transcription	Brain Germinal Matrix	brain
44	chr11:76547800-76549000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr11:76547800-76549400	Weak transcription	Colon Smooth Muscle	Colon
46	chr11:76547800-76550000	Enhancers	Left Ventricle	heart
47	chr11:76547800-76550200	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr11:76547800-76550200	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr11:76547800-76550400	Enhancers	Brain Hippocampus Middle	brain
50	chr11:76548000-76548200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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