Variant report

Variant	rs11237013
Chromosome Location	chr11:76630871-76630872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:76630352..76631643-chr11:76756099..76757719,29	MCF-7	breast:
2	chr11:76629872..76631321-chr11:76756709..76758148,6	K562	blood:
3	chr11:76432521..76433371-chr11:76630070..76630907,3	MCF-7	breast:
4	chr11:76517508..76519118-chr11:76629396..76631998,9	MCF-7	breast:
5	chr11:76445248..76448071-chr11:76628717..76631883,4	MCF-7	breast:
6	chr11:76630452..76631634-chr11:76749942..76751223,14	MCF-7	breast:
7	chr11:76630631..76631525-chr11:76751691..76752659,7	MCF-7	breast:
8	chr11:76630144..76633520-chr11:76634878..76637709,3	K562	blood:
9	chr11:76573371..76575582-chr11:76628469..76631182,2	MCF-7	breast:
10	chr11:76444256..76445576-chr11:76630135..76631218,4	K562	blood:
11	chr11:76432571..76433259-chr11:76630324..76631367,3	MCF-7	breast:
12	chr11:76493335..76495613-chr11:76628217..76631203,2	MCF-7	breast:
13	chr11:76630811..76631564-chr20:49404499..49405133,2	MCF-7	breast:
14	chr11:76630720..76631502-chr11:76757944..76758687,2	MCF-7	breast:
15	chr11:76518111..76519175-chr11:76629549..76632027,10	K562	blood:
16	chr11:76630107..76631528-chr11:76750174..76751202,8	MCF-7	breast:
17	chr11:76629857..76631654-chr11:76756070..76758105,23	MCF-7	breast:
18	chr11:76630519..76631417-chr11:76751967..76752554,2	MCF-7	breast:
19	chr11:76630803..76631497-chr11:76645979..76646483,2	MCF-7	breast:
20	chr11:76570391..76573422-chr11:76629389..76632436,3	MCF-7	breast:
21	chr11:76520927..76521861-chr11:76629465..76631202,7	MCF-7	breast:
22	chr11:76519335..76520044-chr11:76630346..76631103,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000182704	Chromatin interaction
ENSG00000255100	Chromatin interaction
ENSG00000198488	Chromatin interaction
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10899304	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899306	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899326	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10899331	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10899334	0.83[ASN][1000 genomes]
rs10899339	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs11236980	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236981	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236992	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11237010	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11237017	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11237048	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11237053	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12222735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12222780	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12226468	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1561647	0.90[CHB][hapmap]
rs17135325	0.90[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs60495644	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72639138	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72639139	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72639140	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518920	chr11:76573016-76637651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76597000-76631000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:76613600-76631200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:76615600-76631200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:76618200-76637600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:76622600-76631200	Weak transcription	Spleen	Spleen
6	chr11:76622800-76631200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:76626600-76631200	Weak transcription	Esophagus	oesophagus
8	chr11:76627400-76631600	Enhancers	K562	blood
9	chr11:76628000-76637600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:76629000-76631400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:76629400-76631600	Enhancers	Brain Substantia Nigra	brain
12	chr11:76629800-76631400	Enhancers	HUVEC	blood vessel
13	chr11:76629800-76631600	Enhancers	Adipose Nuclei	Adipose
14	chr11:76630000-76631000	Enhancers	Primary T cells from cord blood	blood
15	chr11:76630000-76631000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr11:76630000-76631000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:76630000-76631000	Enhancers	Fetal Kidney	kidney
18	chr11:76630000-76631000	Enhancers	Hela-S3	cervix
19	chr11:76630000-76631200	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr11:76630000-76631200	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr11:76630000-76631200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:76630000-76631200	Weak transcription	HMEC	breast
23	chr11:76630000-76631400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr11:76630000-76631400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:76630000-76631400	Enhancers	Fetal Lung	lung
26	chr11:76630000-76631400	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr11:76630000-76631600	Enhancers	Primary B cells from peripheral blood	blood
28	chr11:76630000-76631600	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr11:76630000-76631600	Enhancers	Brain Hippocampus Middle	brain
30	chr11:76630000-76631600	Enhancers	Colon Smooth Muscle	Colon
31	chr11:76630000-76633400	Enhancers	Stomach Mucosa	stomach
32	chr11:76630200-76631000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:76630200-76631000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr11:76630200-76631000	Enhancers	Duodenum Mucosa	Duodenum
35	chr11:76630200-76631000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr11:76630200-76631000	Weak transcription	NHLF	lung
37	chr11:76630200-76631200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr11:76630200-76631200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr11:76630200-76631200	Weak transcription	Brain Angular Gyrus	brain
40	chr11:76630200-76631200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr11:76630200-76631200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:76630200-76631200	Weak transcription	Fetal Intestine Large	intestine
43	chr11:76630200-76631400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr11:76630200-76631600	Enhancers	NHEK	skin
45	chr11:76630200-76643400	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr11:76630200-76645600	Weak transcription	Fetal Brain Female	brain
47	chr11:76630400-76631000	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr11:76630400-76631000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:76630400-76631000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:76630400-76631000	Enhancers	Liver	Liver

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