Variant report

Variant	rs10899304
Chromosome Location	chr11:76603366-76603367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76601587..76604030-chr11:76605772..76607443,2	K562	blood:
2	chr11:76602692..76604859-chr11:76610670..76613560,2	K562	blood:
3	chr11:76589044..76590686-chr11:76602366..76604601,2	MCF-7	breast:
4	chr11:76602692..76606775-chr11:76611871..76613560,3	K562	blood:
5	chr11:76493976..76496042-chr11:76602744..76605422,2	K562	blood:

Variant related genes	Relation type
ENSG00000182704	Chromatin interaction
ENSG00000212030	Chromatin interaction
ENSG00000255100	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10899306	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899326	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899331	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10899334	0.81[ASN][1000 genomes]
rs11236980	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11236981	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11236987	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11236992	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11237010	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11237013	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11237017	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12222735	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12222780	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12226468	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60495644	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72639138	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72639139	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72639140	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518920	chr11:76573016-76637651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76581200-76613400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr11:76596800-76614600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:76597000-76605200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr11:76597000-76631000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:76597400-76603400	Weak transcription	Adipose Nuclei	Adipose
6	chr11:76597400-76611200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:76597600-76613600	Weak transcription	NHEK	skin
8	chr11:76597800-76614200	Weak transcription	HMEC	breast
9	chr11:76599400-76604400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:76600200-76613600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr11:76600600-76605800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:76600800-76616800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:76600800-76617200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:76601200-76609000	Weak transcription	Fetal Intestine Small	intestine
15	chr11:76601400-76617000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr11:76602200-76604400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:76602200-76606600	Enhancers	Brain Cingulate Gyrus	brain
18	chr11:76602400-76604400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:76602400-76604400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:76602600-76604000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:76603000-76603400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:76603000-76604200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:76603000-76604200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr11:76603000-76604600	Weak transcription	Brain Anterior Caudate	brain
25	chr11:76603000-76605000	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr11:76603000-76605400	Weak transcription	HUVEC	blood vessel
27	chr11:76603000-76606600	Enhancers	Brain Hippocampus Middle	brain
28	chr11:76603000-76606600	Weak transcription	Hela-S3	cervix
29	chr11:76603000-76611800	Weak transcription	Brain Angular Gyrus	brain
30	chr11:76603000-76612000	Weak transcription	K562	blood
31	chr11:76603000-76613400	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr11:76603200-76603800	Weak transcription	Brain Substantia Nigra	brain

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