Variant report

Variant	rs12226468
Chromosome Location	chr11:76570732-76570733
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76494290..76496487-chr11:76570623..76573983,3	K562	blood:
2	chr11:76569198..76571423-chr11:76574828..76576546,2	K562	blood:
3	chr11:76570713..76572261-chr3:63997664..63999905,2	MCF-7	breast:
4	chr11:76566306..76569293-chr11:76569398..76571273,2	K562	blood:
5	chr11:76496902..76499372-chr11:76570017..76571527,2	K562	blood:
6	chr11:76478547..76482353-chr11:76570414..76574348,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163636	Chromatin interaction
ENSG00000254632	Chromatin interaction
ENSG00000182704	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10899304	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899306	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899326	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11236967	0.80[EUR][1000 genomes]
rs11236980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236981	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236987	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236992	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11237013	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11237017	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12222735	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58026572	0.80[EUR][1000 genomes]
rs58738182	0.81[EUR][1000 genomes]
rs60495644	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7129920	0.81[EUR][1000 genomes]
rs72639138	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76549600-76570800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:76549800-76572000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:76562000-76571200	Weak transcription	Adipose Nuclei	Adipose
4	chr11:76562000-76571400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:76562200-76571000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:76565400-76571400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr11:76566000-76571000	Weak transcription	K562	blood
8	chr11:76566000-76571200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:76566200-76571000	Weak transcription	NHEK	skin
10	chr11:76566600-76571200	Weak transcription	Thymus	Thymus
11	chr11:76566600-76571400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:76567200-76572000	Weak transcription	Lung	lung
13	chr11:76567400-76571200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr11:76567600-76571200	Weak transcription	HMEC	breast
15	chr11:76567800-76571400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:76567800-76571400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr11:76568000-76571400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:76568600-76571400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr11:76569000-76571400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:76569000-76571400	Enhancers	Primary B cells from cord blood	blood
21	chr11:76569400-76571200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr11:76569800-76571400	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr11:76569800-76571400	Weak transcription	Primary B cells from peripheral blood	blood
24	chr11:76570000-76571000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:76570000-76571200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:76570000-76571200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:76570000-76571200	Weak transcription	Placenta	Placenta
28	chr11:76570000-76571200	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr11:76570000-76571400	Weak transcription	GM12878-XiMat	blood
30	chr11:76570600-76570800	Enhancers	Pancreas	Pancrea
31	chr11:76570600-76571200	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr11:76570600-76571200	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr11:76570600-76571400	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr11:76570600-76571400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr11:76570600-76571400	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr11:76570600-76571400	Enhancers	HepG2	liver
37	chr11:76570600-76571600	Enhancers	H1 Cell Line	embryonic stem cell

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